CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os12g0210400

Gene name
Homology with Arabidopsis Similar to At5g49780: ATP binding / kinase/ protein serine/threonine kinase (HF=7e-3)

Module size 6 genes

NF 0.20

%ile 17.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.44 58.1 0.88 Os12g0210400 AK068774.1 - Protein kinase domain containing protein 7e-3 At5g49780 ATP binding / kinase/ protein serine/threonine kinase O.I. H.G. S.X.
0.26 25.6 0.88 Os10g0442900 CB674801 - ABC transporter domain containing protein 2e-9 At1g53390 ATPase, coupled to transmembrane movement of substances O.I. H.G. S.X.
0.18 13.7 0.90 Os04g0379600 AK101106.1 - Nitrate-induced NOI family protein 4e+0 At4g05430 - O.I. H.G. S.X.
0.15 10.3 0.88 Os01g0908200 AK067269.1 - BTB/POZ domain containing protein 2e-1 At3g43574 unknown protein O.I. H.G. S.X.
0.13 8.2 0.88 Os03g0582200 AK099288.1 - SCAMP family protein 1e-9 At2g20840 secretory carrier membrane protein (SCAMP) family protein O.I. H.G. S.X.
0.13 8.2 0.88 Os10g0431900 AK106265.1 - Avr9/Cf-9 rapidly elicited protein 264 8e-1 At5g35580 ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
58.5 99.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
11.5 98.2 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
7.2 97.4 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.7 97.3 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
6.3 97.2 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.3 97.2 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.1 97.1 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.9 97.0 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.9 97.0 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.8 97.0 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.029 1 GO:0015031 The directed movement of proteins into, out of, within or between cells.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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