Co-expression analysis

Gene ID	Os12g0209100
Gene name
Homology with Arabidopsis	Similar to At4g02090: unknown protein (HF=4e-1)
Module size	6 genes
NF	0.40
%ile	48.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.50	68.0	0.95	Os12g0209100	9640.m01005	-	Conserved hypothetical protein	4e-1	At4g02090	unknown protein	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.55	73.7	0.96	Os02g0602500	AK064340.1	-	Isy1-like splicing family protein	5e-8	At3g18790	-	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.47	62.3	0.96	Os02g0495900	9630.m02799	-	Conserved hypothetical protein	1e+0	At3g01990	ACR6	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.36	44.0	0.96	Os09g0364900	AK120754.1	-	SNF1-related kinase complex anchoring protein SIP1	4e-1	At5g19800	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.33	38.8	0.96	Os08g0567200	AK061692.1	-	RNA-binding region RNP-1 (RNA recognition motif)domain containing protein	3e+0	At5g47700	60S acidic ribosomal protein P1 (RPP1C)	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.26	25.6	0.96	Os01g0727400	AK065692.1	-	Conserved hypothetical protein	6e-16	At1g72420	-	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
21.1	99.2	GSM422672	Drought	GSE16865	Heterologous microarrays for the study of drought stress in Musa
20.7	99.2	GSM422676	Control	GSE16865	Heterologous microarrays for the study of drought stress in Musa
11.9	98.3	GSM377070	Genomic DNA - 45 day old leaf sample - mutant d1	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.6	98.2	GSM377071	Genomic DNA - 45 day old leaf sample - mutant d256	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.7	98.1	GSM409428	Nipponbare_young panicle 2cm, biological rep4	GSE16265	SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
9.9	98.0	GSM409421	Nipponbare_young panicle 2cm, biological rep1	GSE16265	SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
9.1	97.9	GSM409429	Nipponbare_young panicle 2cm, biological rep5	GSE16265	SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
8.8	97.8	GSM377081	Genomic DNA - 45 day old leaf sample - mutant g7534	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.7	97.8	GSM409422	Nipponbare_young panicle 2cm, biological rep2	GSE16265	SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
8.6	97.8	GSM377074	Genomic DNA - 45 day old leaf sample - mutant g282	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF	Genes	GO ID	Process Name	Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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