CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os12g0201600

Gene name
Homology with Arabidopsis Similar to At1g13340: unknown protein (HF=1e+0)

Module size 6 genes

NF 0.61

%ile 82.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.9 0.98 Os12g0201600 9640.m00938 - - 1e+0 At1g13340 unknown protein O.I. H.G. S.X.
0.67 87.2 0.98 Os03g0695000 9631.m04760 - - 2e+0 At5g47080 CKB1 O.I. H.G. S.X.
0.60 79.7 0.98 Os04g0229000 NM_190917.1 - - 2e+0 At2g17570 undecaprenyl pyrophosphate synthetase family protein / UPP synthetase family protein O.I. H.G. S.X.
0.55 73.7 0.98 Os11g0608800 9639.m03605 - - 3e+0 At1g73120 unknown protein O.I. H.G. S.X.
0.40 51.1 0.98 Os10g0382200 9638.m02011 - - 1e+0 At1g07610 MT1C O.I. H.G. S.X.
0.29 31.1 0.98 Os12g0255100 AK119990.1 - - 1e+0 At5g18690 AGP25 (ARABINOGALACTAN PROTEINS 25) O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
68.2 99.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
38.4 99.8 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
24.6 99.4 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
19.8 99.1 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
19.2 99.0 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
17.0 98.8 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.1 98.7 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.0 98.6 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.4 98.5 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.3 98.4 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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