CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os12g0196200

Gene name
Homology with Arabidopsis Similar to At5g06030: self-incompatibility protein-related (HF=3e+0)

Module size 17 genes

NF 0.64

%ile 86.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.89 96.9 0.98 Os12g0196200 9640.m00883 - - 3e+0 At5g06030 self-incompatibility protein-related O.I. H.G. S.X.
0.79 93.6 0.98 Os07g0133200 9635.m00340 - - 9e-1 At1g33860 unknown protein O.I. H.G. S.X.
0.77 93.1 0.98 Os02g0126200 9630.m00240 - - 6e-1 At1g54095 unknown protein O.I. H.G. S.X.
0.77 93.1 0.98 Os08g0248400 AK109903.1 - - 8e-1 At4g18660 unknown protein O.I. H.G. S.X.
0.73 91.1 0.98 Os12g0165400 9640.m00608 - Hypothetical protein 1e+0 At1g53480 unknown protein O.I. H.G. S.X.
0.67 87.2 0.98 Os04g0347500 9632.m02642 - - 9e-2 At3g21120 F-box family protein O.I. H.G. S.X.
0.63 82.7 0.98 Os09g0446400 9637.m02402 - Transposase 2e-1 At2g19480 NAP1 O.I. H.G. S.X.
0.63 82.7 0.98 Os01g0312300 9629.m02003 - - 2e+0 At5g06660 unknown protein O.I. H.G. S.X.
0.61 81.2 0.98 Os08g0492200 9636.m03870 - - 4e-2 At2g41260 M17 O.I. H.G. S.X.
0.58 77.0 0.98 Os05g0146600 9633.m00472 - - 3e+0 At4g31730 GDU1 (GLUTAMINE DUMPER 1) O.I. H.G. S.X.
0.58 77.0 0.98 Os08g0493100 AK121365.1 - Cyclin-like F-box domain containing protein 1e+0 At1g47370 Toll-Interleukin-Resistance (TIR) domain-containing protein O.I. H.G. S.X.
0.58 77.0 0.97 Os12g0168600 9640.m00635 - - 3e+0 At4g02890 UBQ14 O.I. H.G. S.X.
0.54 71.9 0.98 Os03g0827200 NM_185123.1 - Retrotransposon gag protein family protein 1e-1 At3g30247 - O.I. H.G. S.X.
0.54 71.9 0.98 Os04g0134300 9632.m00375 - - 2e+0 At5g25420 xanthine/uracil permease family protein O.I. H.G. S.X.
0.52 69.6 0.98 Os08g0360500 9636.m02688 - - 1e+0 At1g62480 vacuolar calcium-binding protein-related O.I. H.G. S.X.
0.49 64.4 0.98 Os03g0147300 9631.m00458 - - 2e+0 At3g02370 unknown protein O.I. H.G. S.X.
0.33 38.8 0.98 Os04g0441000 9632.m03472 - - 5e-1 At2g02490 unknown protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
44.1 99.9 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
31.2 99.7 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
30.5 99.7 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
19.2 99.0 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
18.3 98.9 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
17.9 98.9 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
17.1 98.8 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
17.0 98.8 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.7 98.8 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.7 98.8 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.019 1 GO:0006310 Any process by which a new genotype is formed by reassortment of genes resulting in gene combinations different from those that were present in the parents. In eukaryotes genetic recombination can occur by chromosome assortment, intrachromosomal recombination, or nonreciprocal interchromosomal recombination. Intrachromosomal recombination occurs by crossing over. In bacteria it may occur by genetic transformation, conjugation, transduction, or F-duction.
0.018 1 GO:0006278 The process whereby new strands of DNA are synthesized, using RNA as a template for RNA-dependent DNA polymerases (e.g. reverse transcriptase) that synthesize the new strands.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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