CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os12g0193100

Gene name
Homology with Arabidopsis Similar to At3g61840: unknown protein (HF=6e-1)

Module size 6 genes

NF 0.45

%ile 57.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.9 0.95 Os12g0193100 AK068584.1 - Subtilisin inhibitor I (ASI-I) [Contains:Subtilisin inhibitor II (ASI-II)] 6e-1 At3g61840 unknown protein O.I. H.G. S.X.
0.50 68.0 0.96 Os04g0278900 AK108886.1 - Dihydrouridine synthase, DuS family protein 2e-3 At3g63510 FAD binding / catalytic/ tRNA dihydrouridine synthase O.I. H.G. S.X.
0.43 55.4 0.95 Os04g0534300 AK065842.1 - Ubiquitin interacting motif domain containingprotein 6e-1 At3g50550 unknown protein O.I. H.G. S.X.
0.40 51.1 0.94 Os05g0580900 AK108609.1 - Conserved hypothetical protein 6e-14 At2g27200 GTP-binding family protein O.I. H.G. S.X.
0.36 44.0 0.95 Os09g0248000 AK120327.1 - Conserved hypothetical protein 1e-7 At2g03800 GEK1 (GEKO1) O.I. H.G. S.X.
0.17 12.6 0.94 Os07g0618500 AK068975.1 - Folate synthesis protein precursor [INCLUDES:2-amino-4-hydroxy-6- hydroxymethyldihydropteridinepyrophosphokinase (EC 2.7.6.3) (HPPK) 7e-6 At1g53450 unknown protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
29.4 99.7 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
11.8 98.3 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.4 98.2 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.4 98.2 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.3 98.2 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.9 98.1 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.9 98.1 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.6 98.1 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.2 98.0 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.1 98.0 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.222 1 GO:0006760 The chemical reactions and pathways involving folic acid and its derivatives.
0.167 1 GO:0009396 The chemical reactions and pathways resulting in the formation of folic acid and its derivatives.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage