CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os12g0186700

Gene name
Homology with Arabidopsis Similar to At4g28815: transcription regulator (HF=3e+0)

Module size 8 genes

NF 0.05

%ile 3.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.93 99.2 0.88 Os12g0186700 9640.m00793 - Conserved hypothetical protein 3e+0 At4g28815 transcription regulator O.I. H.G. S.X.
0.33 38.8 0.92 Os12g0245100 AK065859.1 - Hypothetical protein 1e-2 At2g37590 Dof-type zinc finger domain-containing protein O.I. H.G. S.X.
0.27 27.5 0.92 Os08g0502600 AK107730.1 - Calcium-binding EF-hand domain containing protein 4e+0 At3g50770 calmodulin-related protein, putative O.I. H.G. S.X.
0.23 21.2 0.96 Os06g0151700 AK106925.1 - - 1e-2 At3g55950 CCR3 (ARABIDOPSIS THALIANA CRINKLY4 RELATED 3) O.I. H.G. S.X.
0.06 3.0 0.96 Os06g0594300 AK110986.1 - Conserved hypothetical protein 8e-1 At5g30341 unknown protein O.I. H.G. S.X.
0.04 2.0 0.95 Os02g0100700 AK070106.1 - Integrins alpha chain family protein 1e-12 At3g51050 FG-GAP repeat-containing protein O.I. H.G. S.X.
0.02 1.0 0.95 Os06g0263400 9634.m01526 - Naringenin-chalcone synthase family protein 1e-2 At2g26640 KCS11 (3-KETOACYL-COA SYNTHASE 11) O.I. H.G. S.X.
0.02 1.0 0.95 Os04g0634000 AK106486.1 - S-locus glycoprotein family protein 1e-3 At1g24650 leucine-rich repeat family protein / protein kinase family protein O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
23.2 99.3 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
18.9 99.0 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
13.9 98.5 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.7 98.5 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.5 98.5 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.4 98.3 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.3 98.3 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.2 98.3 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.3 98.1 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.3 98.1 GSM302916 endo6D_rep1 GSE11966 Expression data from rice embryo,endosperm,root,leaf and seedling

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.182 1 GO:0007160 The binding of a cell to the extracellular matrix via adhesion molecules.
0.069 1 GO:0007155 The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules.
0.014 1 GO:0009058 The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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