Co-expression analysis

Gene ID	Os12g0179700
Gene name
Homology with Arabidopsis	Similar to At2g01464: - (HF=1e+0)
Module size	6 genes
NF	0.42
%ile	52.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.73	91.1	0.92	Os12g0179700	AK120612.1	-	Hypothetical protein	1e+0	At2g01464	-	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.55	73.7	0.91	Os11g0579600	AK106009.1	-	Conserved hypothetical protein	2e-1	At1g76070	unknown protein	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.50	68.0	0.91	Os08g0355500	AK106035.1	-	Conserved hypothetical protein	5e-1	At5g23840	MD-2-related lipid recognition domain-containing protein / ML domain-containing protein	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.50	68.0	0.91	Os05g0543800	AK102850.1	-	Hypothetical protein	4e+0	Atmg00720	-	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.28	31.1	0.92	Os01g0933400	AK070303.1	-	Hypothetical protein	7e-1	At1g21600	PTAC6 (PLASTID TRANSCRIPTIONALLY ACTIVE6)	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.19	15.1	0.92	Os08g0535100	AK065449.1	-	Conserved hypothetical protein	3e-1	At1g73000	-	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
66.8	99.9	GSM422674	Musa_DNA_RICE	GSE16865	Heterologous microarrays for the study of drought stress in Musa
28.5	99.6	GSM422676	Control	GSE16865	Heterologous microarrays for the study of drought stress in Musa
10.8	98.1	GSM422672	Drought	GSE16865	Heterologous microarrays for the study of drought stress in Musa
8.3	97.7	GSM357133	14-day-old seedling, rep 2	GSE14275	Expression data for heat shock in rice seedlings
5.2	96.7	GSM377072	Genomic DNA - 45 day old leaf sample - mutant d1137	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
4.7	96.4	GSM377084	Genomic DNA - 45 day old leaf sample - mutant f1856	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
4.2	96.0	GSM377073	Genomic DNA - 45 day old leaf sample - mutant d2943	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
4.2	96.0	GSM377075	Genomic DNA - 45 day old leaf sample - mutant g650	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
3.9	95.8	GSM377077	Genomic DNA - 45 day old leaf sample - mutant g6489	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
3.7	95.6	GSM377071	Genomic DNA - 45 day old leaf sample - mutant d256	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF	Genes	GO ID	Process Name	Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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