CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os12g0178800

Gene name
Homology with Arabidopsis Similar to At5g61270: PIF7 (PHYTOCHROME-INTERACTING FACTOR7) (HF=3e-2)

Module size 6 genes

NF 0.59

%ile 80.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.9 0.98 Os12g0178800 AK063709.1 - Hypothetical protein 3e-2 At5g61270 PIF7 (PHYTOCHROME-INTERACTING FACTOR7) O.I. H.G. S.X.
0.73 91.1 0.98 Os03g0574200 9631.m03622 - - 3e-1 At1g52342 unknown protein O.I. H.G. S.X.
0.59 78.0 0.98 Os04g0689200 9632.m05799 - - 6e+0 At5g15190 unknown protein O.I. H.G. S.X.
0.56 76.3 0.98 Os08g0383901 9636.m02930 - - 2e+0 At2g21970 SEP2 (STRESS ENHANCED PROTEIN 2) O.I. H.G. S.X.
0.44 58.1 0.98 Os12g0146750 9640.m00436 - - 1e+0 At3g53470 unknown protein O.I. H.G. S.X.
0.38 46.9 0.98 Os11g0527700 AU097541 - - 2e-2 At3g61260 DNA-binding family protein / remorin family protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
26.2 99.5 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
21.7 99.2 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
10.1 98.0 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.1 98.0 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.1 97.9 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.2 97.7 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.9 97.6 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.7 97.6 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.3 97.5 GSM195222 Ovary 2, biological rep 2 GSE7951 Genome-wide gene expression profiling of rice stigma
7.2 97.4 GSM195221 Ovary 1, biological rep 1 GSE7951 Genome-wide gene expression profiling of rice stigma

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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