CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os12g0160500

Gene name
Homology with Arabidopsis Similar to At2g35940: BLH1 (BEL1-LIKE HOMEODOMAIN 1) (HF=5e-31)

Module size 19 genes

NF 0.36

%ile 41.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.71 89.6 0.71 Os12g0160500 AK120844.1 - Homeobox domain containing protein 5e-31 At2g35940 BLH1 (BEL1-LIKE HOMEODOMAIN 1) O.I. H.G. S.X.
0.56 76.3 0.77 Os10g0127900 AK104771.1 - Conserved hypothetical protein 1e-1 At1g76980 - O.I. H.G. S.X.
0.49 64.4 0.84 Os05g0516100 AK107721.1 - Conserved hypothetical protein 3e-1 At5g44570 unknown protein O.I. H.G. S.X.
0.46 60.9 0.83 Os08g0524800 AK099291.1 - TA1 protein (Fragment) 4e-6 At4g34530 CIB1 (CRYPTOCHROME-INTERACTING BASIC-HELIX-LOOP-HELIX 1) O.I. H.G. S.X.
0.44 58.1 0.81 Os01g0889900 AK099945.1 - S-locus glycoprotein family protein 1e-3 At1g34300 lectin protein kinase family protein O.I. H.G. S.X.
0.43 55.4 0.76 Os12g0268000 AK071599.1 - Cytochrome P450 71A1 (EC 1.14.-.-) (CYPLXXIA1)(ARP-2) 2e-1 At5g67310 CYP81G1 O.I. H.G. S.X.
0.42 53.9 0.79 Os01g0194300 AY323485.1 - NPR1-like protein 1e-3 At1g64280 NPR1 (NONEXPRESSER OF PR GENES 1) O.I. H.G. S.X.
0.40 51.1 0.82 Os04g0457500 AU075570 - Gamma-glutamyltranspeptidase family protein 7e+0 At4g12380 unknown protein O.I. H.G. S.X.
0.39 48.3 0.85 Os02g0800500 AK067815.1 - NADH-ubiquinone oxidoreductase 39 kDa subunit,mitochondrial precursor (EC 1.6.5.3) (EC 1.6.99.3)(Complex I-39KD) (CI-39KD) 1e-10 At2g20360 binding / catalytic/ coenzyme binding O.I. H.G. S.X.
0.39 48.3 0.86 Os04g0573900 AK061650.1 - Cytochrome P450-like protein 4e+0 At3g48520 CYP94B3 O.I. H.G. S.X.
0.36 44.0 0.79 Os06g0612300 AK071104.1 - Zn-finger, C2H2 type domain containing protein 2e-39 At3g20880 zinc finger (C2H2 type) protein (WIP4) O.I. H.G. S.X.
0.35 41.7 0.84 Os08g0492000 AK100814.1 - Oligopeptide transporter OPT superfamily protein 6e-21 At5g55930 OPT1 (OLIGOPEPTIDE TRANSPORTER 1) O.I. H.G. S.X.
0.34 40.0 0.80 Os01g0909400 AK068178.1 - Plant protein of unknown function DUF868 familyprotein 1e-5 At1g06160 ORA59 (OCTADECANOID-RESPONSIVE ARABIDOPSIS AP2/ERF 59) O.I. H.G. S.X.
0.33 38.8 0.77 Os08g0467300 AK105541.1 - ANTH domain containing protein 1e-2 At1g25240 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related O.I. H.G. S.X.
0.29 31.1 0.75 Os01g0122000 AK109465.1 - TRAF-like domain containing protein 8e-1 At5g18748 unknown protein O.I. H.G. S.X.
0.28 31.1 0.81 Os05g0502000 9633.m03967 - Cyclic nucleotide-gated ion channel 4 (AtCNGC4)(Cyclic nucleotide-and calmodulin-regulated ion channel4) (AtHLM1) 3e-7 At5g54250 ATCNGC4 (CYCLIC NUCLEOTIDE-GATED CATION CHANNEL 4) O.I. H.G. S.X.
0.25 24.1 0.74 Os03g0108500 AK108704.1 - Sterol desaturase family protein 2e-4 At4g22756 SMO1-2 (STEROL C4-METHYL OXIDASE 1-2) O.I. H.G. S.X.
0.25 24.1 0.77 Os04g0680800 AK111773.1 - Mlo-related protein family protein 5e-17 At1g26700 MLO14 (MILDEW RESISTANCE LOCUS O 14) O.I. H.G. S.X.
0.19 15.1 0.82 Os03g0418700 AK101797.1 - Conserved hypothetical protein 4e-1 At5g41960 unknown protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
14.1 98.5 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
13.6 98.5 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
12.3 98.3 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.2 98.3 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.7 98.2 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.5 98.2 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.9 98.1 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.8 98.1 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
10.6 98.1 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.4 98.1 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.087 1 GO:0008219 The specific activation or halting of processes within a cell so that its vital functions markedly cease, rather than simply deteriorating gradually over time, which culminates in cell death.
0.059 1 GO:0006811 The directed movement of charged atoms or small charged molecules into, out of, within or between cells.
0.012 1 GO:0045449 Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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