CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os12g0152900

Gene name
Homology with Arabidopsis Similar to At1g08320: bZIP family transcription factor (HF=5e-3)

Module size 7 genes

NF 0.70

%ile 92.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.59 78.0 0.90 Os12g0152900 AK101620.1 - Basic-leucine zipper (bZIP) transcription factordomain containing protein 5e-3 At1g08320 bZIP family transcription factor O.I. H.G. S.X.
0.86 96.4 0.90 Os08g0130000 9636.m00276 - Conserved hypothetical protein 1e-11 At2g04305 magnesium transporter CorA-like protein-related O.I. H.G. S.X.
0.77 93.1 0.91 Os05g0148900 AK120912.1 - Glutathione-S-transferase 19E50 1e+0 At1g03860 ATPHB2 (PROHIBITIN 2) O.I. H.G. S.X.
0.71 89.6 0.92 Os04g0534200 AK109583.1 - Receptor kinase-like protein 8e-4 At5g41180 leucine-rich repeat protein kinase, putative O.I. H.G. S.X.
0.57 77.0 0.92 Os05g0339000 9633.m02481 - VHS domain containing protein 6e-2 At5g46030 unknown protein O.I. H.G. S.X.
0.50 68.0 0.92 Os02g0448000 9630.m02338 - Protein of unknown function DUF296 domaincontaining protein 8e-6 At4g22810 DNA-binding protein-related O.I. H.G. S.X.
0.44 58.1 0.93 Os12g0640700 AK108649.1 - N/apple PAN domain containing protein 8e-1 At5g44500 small nuclear ribonucleoprotein associated protein B, putative / snRNP-B, putative / Sm protein B, putative O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
14.2 98.5 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.0 98.5 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.0 98.5 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.4 98.5 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.3 98.3 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.1 98.3 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
12.1 98.3 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.7 98.2 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.7 98.2 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.7 98.2 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

A co-expression module including the maize gene, Zm.16855.1.A1_at, orthologous to the query gene, Os12g0152900

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.69 86.5 Zm.16855.1.A1_at At1g08320 liguleless2 - 1e-3 At5g06950 AHBP-1B O.I. H.G. S.X.
0.52 67.3 Zm.18472.1.A1_at At1g08320 - - 1e+0 At5g47060 senescence-associated protein-related O.I. H.G. S.X.
0.48 61.3 ZmAffx.956.1.A1_at At1g08320 - - 8e-1 At1g08580 unknown protein O.I. H.G. S.X.
0.40 48.5 Zm.15669.1.S1_at At1g08320 plant-specific domain TIGR01570 family protein - 1e-4 At3g25640 unknown protein O.I. H.G. S.X.
0.32 33.4 Zm.18239.1.S1_at At1g08320 sugar carrier protein C - 1e-1 At5g41090 anac095 (Arabidopsis NAC domain containing protein 95) O.I. H.G. S.X.
0.29 28.1 ZmAffx.1017.1.A1_at At1g08320 Hypothetical protein LOC100193713 - 3e+0 At3g25030 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.27 24.6 Zm.1869.1.S1_at At1g08320 hypothetical protein LOC100274336 - 8e-5 At4g05020 NDB2 (NAD(P)H dehydrogenase B2) O.I. H.G. S.X.
0.26 22.7 Zm.5230.1.A1_at At1g08320 acyl-desaturase - 2e-17 At2g43710 SSI2 O.I. H.G. S.X.
0.26 22.7 Zm.5070.1.A1_at At1g08320 hypothetical protein LOC100193023 - 2e-16 At1g22950 iron ion binding / oxidoreductase/ oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors O.I. H.G. S.X.
0.25 21.3 Zm.6555.2.S1_at At1g08320 hypothetical protein LOC100273907 - 1e-31 At3g11710 ATKRS-1 (ARABIDOPSIS THALIANA LYSYL-TRNA SYNTHETASE 1) O.I. H.G. S.X.
0.25 21.3 Zm.9354.1.A1_at At1g08320 - - 1e+0 At2g28330 unknown protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera

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