Co-expression analysis

Gene ID	Os12g0152900
Gene name
Homology with Arabidopsis	Similar to At1g08320: bZIP family transcription factor (HF=5e-3)
Module size	7 genes
NF	0.70
%ile	92.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.59	78.0	0.90	Os12g0152900	AK101620.1	-	Basic-leucine zipper (bZIP) transcription factordomain containing protein	5e-3	At1g08320	bZIP family transcription factor	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.86	96.4	0.90	Os08g0130000	9636.m00276	-	Conserved hypothetical protein	1e-11	At2g04305	magnesium transporter CorA-like protein-related	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.77	93.1	0.91	Os05g0148900	AK120912.1	-	Glutathione-S-transferase 19E50	1e+0	At1g03860	ATPHB2 (PROHIBITIN 2)	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.71	89.6	0.92	Os04g0534200	AK109583.1	-	Receptor kinase-like protein	8e-4	At5g41180	leucine-rich repeat protein kinase, putative	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.57	77.0	0.92	Os05g0339000	9633.m02481	-	VHS domain containing protein	6e-2	At5g46030	unknown protein	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.50	68.0	0.92	Os02g0448000	9630.m02338	-	Protein of unknown function DUF296 domaincontaining protein	8e-6	At4g22810	DNA-binding protein-related	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.44	58.1	0.93	Os12g0640700	AK108649.1	-	N/apple PAN domain containing protein	8e-1	At5g44500	small nuclear ribonucleoprotein associated protein B, putative / snRNP-B, putative / Sm protein B, putative	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
14.2	98.5	GSM377075	Genomic DNA - 45 day old leaf sample - mutant g650	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.0	98.5	GSM377070	Genomic DNA - 45 day old leaf sample - mutant d1	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.0	98.5	GSM377073	Genomic DNA - 45 day old leaf sample - mutant d2943	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.4	98.5	GSM377084	Genomic DNA - 45 day old leaf sample - mutant f1856	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.3	98.3	GSM377077	Genomic DNA - 45 day old leaf sample - mutant g6489	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.1	98.3	GSM422674	Musa_DNA_RICE	GSE16865	Heterologous microarrays for the study of drought stress in Musa
12.1	98.3	GSM377074	Genomic DNA - 45 day old leaf sample - mutant g282	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.7	98.2	GSM377071	Genomic DNA - 45 day old leaf sample - mutant d256	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.7	98.2	GSM377081	Genomic DNA - 45 day old leaf sample - mutant g7534	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.7	98.2	GSM377086	Genomic DNA - 45 day old leaf sample - IR64 wtcheck	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF	Genes	GO ID	Process Name	Link to AmiGO

Inter-species module comparison

A co-expression module including the wheat gene, Ta.8841.2.S1_a_at, orthologous to the query gene, Os12g0152900

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.76	90.1	Ta.8841.2.S1_a_at	At1g08320	-	-	3e-1	At3g12250	TGA6 (TGACG MOTIF-BINDING FACTOR 6)	O.I.	H.G.	S.X.	Please select
0.88	94.4	TaAffx.63920.1.A1_at	At1g08320	-	-	2e+0	At2g02880	mucin-related	O.I.	H.G.	S.X.	Please select
0.88	94.4	TaAffx.63920.1.A1_x_at	At1g08320	-	-	2e+0	At2g02880	mucin-related	O.I.	H.G.	S.X.	Please select
0.75	89.8	Ta.8896.2.S1_a_at	At1g08320	-	-	1e-1	At1g15970	methyladenine glycosylase family protein	O.I.	H.G.	S.X.	Please select
0.70	87.2	Ta.25946.1.A1_at	At1g08320	-	-	5e+0	At5g44585	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	86.3	Ta.8896.1.S1_x_at	At1g08320	-	-	1e-1	At1g15970	methyladenine glycosylase family protein	O.I.	H.G.	S.X.	Please select
0.63	83.1	Ta.8896.2.S1_x_at	At1g08320	-	-	1e-1	At1g15970	methyladenine glycosylase family protein	O.I.	H.G.	S.X.	Please select
0.59	79.8	Ta.9494.1.S1_a_at	At1g08320	-	-	1e-8	At1g53580	GLY3 (GLYOXALASE II 3)	O.I.	H.G.	S.X.	Please select
0.42	60.9	Ta.4779.1.S1_at	At1g08320	-	-	9e-1	At5g20920	EIF2 BETA	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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