CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os12g0152900

Gene name
Homology with Arabidopsis Similar to At1g08320: bZIP family transcription factor (HF=5e-3)

Module size 7 genes

NF 0.70

%ile 92.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.59 78.0 0.90 Os12g0152900 AK101620.1 - Basic-leucine zipper (bZIP) transcription factordomain containing protein 5e-3 At1g08320 bZIP family transcription factor O.I. H.G. S.X.
0.86 96.4 0.90 Os08g0130000 9636.m00276 - Conserved hypothetical protein 1e-11 At2g04305 magnesium transporter CorA-like protein-related O.I. H.G. S.X.
0.77 93.1 0.91 Os05g0148900 AK120912.1 - Glutathione-S-transferase 19E50 1e+0 At1g03860 ATPHB2 (PROHIBITIN 2) O.I. H.G. S.X.
0.71 89.6 0.92 Os04g0534200 AK109583.1 - Receptor kinase-like protein 8e-4 At5g41180 leucine-rich repeat protein kinase, putative O.I. H.G. S.X.
0.57 77.0 0.92 Os05g0339000 9633.m02481 - VHS domain containing protein 6e-2 At5g46030 unknown protein O.I. H.G. S.X.
0.50 68.0 0.92 Os02g0448000 9630.m02338 - Protein of unknown function DUF296 domaincontaining protein 8e-6 At4g22810 DNA-binding protein-related O.I. H.G. S.X.
0.44 58.1 0.93 Os12g0640700 AK108649.1 - N/apple PAN domain containing protein 8e-1 At5g44500 small nuclear ribonucleoprotein associated protein B, putative / snRNP-B, putative / Sm protein B, putative O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
14.2 98.5 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.0 98.5 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.0 98.5 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.4 98.5 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.3 98.3 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.1 98.3 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
12.1 98.3 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.7 98.2 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.7 98.2 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.7 98.2 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.204392.1.S1_at, orthologous to the query gene, Os12g0152900

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 99.2 PtpAffx.204392.1.S1_at At1g08320 hypothetical protein - 3e-12 At1g08320 bZIP family transcription factor O.I. H.G. S.X.
0.80 96.0 PtpAffx.37297.1.A1_at At1g08320 hypothetical protein - 5e-3 At1g70290 ATTPS8 O.I. H.G. S.X.
0.77 94.9 PtpAffx.15038.1.A1_at At1g08320 hypothetical protein - 4e+0 At3g43290 unknown protein O.I. H.G. S.X.
0.71 92.6 PtpAffx.160139.1.A1_at At1g08320 hypothetical protein - 4e-17 At4g33950 OST1 (OPEN STOMATA 1) O.I. H.G. S.X.
0.60 86.0 PtpAffx.123468.1.S1_at At1g08320 hypothetical protein - 1e-9 At5g05960 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein O.I. H.G. S.X.
0.50 78.6 PtpAffx.212767.1.S1_at At1g08320 hypothetical protein - 1e-16 At1g23870 ATTPS9 O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Triticum_aestivum
Vitis_vinifera
Zea_mays

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