CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os12g0149000

Gene name
Homology with Arabidopsis Similar to At4g01895: systemic acquired resistance (SAR) regulator protein NIMIN-1-related (HF=4e-2)

Module size 6 genes

NF 0.41

%ile 51.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 87.2 0.89 Os12g0149000 AK108734.1 - Hypothetical protein 4e-2 At4g01895 systemic acquired resistance (SAR) regulator protein NIMIN-1-related O.I. H.G. S.X.
0.53 71.3 0.88 Os01g0917700 9629.m06846 - PAK-box/P21-Rho-binding domain containing protein 7e-2 At1g70190 ribosomal protein L12 family protein O.I. H.G. S.X.
0.46 60.9 0.87 Os07g0634900 C99577 - Myb, DNA-binding domain containing protein 4e-5 At3g12720 ATMYB67 (MYB DOMAIN PROTEIN 67) O.I. H.G. S.X.
0.31 34.5 0.89 Os03g0194300 9631.m00886 - Protein of unknown function DUF568 domaincontaining protein 4e-5 At2g04850 auxin-responsive protein-related O.I. H.G. S.X.
0.31 34.5 0.89 Os06g0247900 AK065325.1 - Endo-beta-1,4-glucanase precursor (EC 3.2.1.4) 1e-5 At1g64390 AtGH9C2 (Arabidopsis thaliana glycosyl hydrolase 9C2) O.I. H.G. S.X.
0.22 19.4 0.90 Os09g0555300 9637.m03266 - Cyclin-like F-box domain containing protein 1e-3 At3g42310 unknown protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
10.5 98.1 GSM302915 emb6D_rep2 GSE11966 Expression data from rice embryo,endosperm,root,leaf and seedling
9.4 97.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
8.1 97.7 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.7 97.6 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.5 97.5 GSM302914 emb6D_rep1 GSE11966 Expression data from rice embryo,endosperm,root,leaf and seedling
6.8 97.3 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.3 97.2 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.3 97.2 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.2 97.1 GSM409433 9311_young panicle 2cm, biological rep4 GSE16265 SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
6.0 97.0 GSM409432 9311_young panicle 2cm, biological rep3 GSE16265 SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.125 1 GO:0006584 The chemical reactions and pathways involving any of a group of physiologically important biogenic amines that possess a catechol (3,4-dihydroxyphenyl) nucleus and are derivatives of 3,4-dihydroxyphenylethylamine.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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