CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os12g0145700

Gene name
Homology with Arabidopsis Similar to At3g52990: pyruvate kinase, putative (HF=2e-63)

Module size 6 genes

NF 0.15

%ile 12.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.55 73.7 0.93 Os12g0145700 AK071391.1 - Pyruvate kinase family protein 2e-63 At3g52990 pyruvate kinase, putative O.I. H.G. S.X.
0.36 44.0 0.93 Os02g0601300 AK099086.1 - - 1e-166 At3g04120 GAPC1 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C SUBUNIT 1) O.I. H.G. S.X.
0.31 34.5 0.93 Os01g0905800 AK073770.1 - Aldolase C-1 6e-20 At3g52930 fructose-bisphosphate aldolase, putative O.I. H.G. S.X.
0.31 34.5 0.93 Os04g0677500 D21297.1 - Pyruvate kinase, cytosolic isozyme (EC 2.7.1.40)(PK) 1e-4 At3g04050 pyruvate kinase, putative O.I. H.G. S.X.
0.08 4.2 0.91 Os01g0647100 AK069624.1 - Plastidic ATP/ADP transporter (Fragment) 6e-27 At1g15500 ATNTT2 O.I. H.G. S.X.
0.07 3.7 0.91 Os03g0854800 AK060748.1 - Conserved hypothetical protein 1e+0 At2g43760 molybdopterin biosynthesis MoaE family protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
13.7 98.5 GSM195227 Anther GSE7951 Genome-wide gene expression profiling of rice stigma
9.1 97.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
6.7 97.3 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.4 97.2 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
4.6 96.3 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
4.4 96.2 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
4.2 96.0 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
4.0 95.9 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
3.9 95.8 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
3.9 95.8 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.167 1 GO:0006006 The chemical reactions and pathways involving glucose, the aldohexose gluco-hexose. D-glucose is dextrorotatory and is sometimes known as dextrose; it is an important source of energy for living organisms and is found free as well as combined in homo- and hetero-oligosaccharides and polysaccharides.
0.130 3 GO:0006096 The chemical reactions and pathways resulting in the breakdown of a monosaccharide (generally glucose) into pyruvate, with the concomitant production of a small amount of ATP. Pyruvate may be converted to ethanol, lactate, or other small molecules, or fed into the TCA cycle.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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