CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os12g0139300

Gene name
Homology with Arabidopsis Similar to At5g05690: CPD (CONSTITUTIVE PHOTOMORPHOGENIC DWARF) (HF=1e-6)

Module size 9 genes

NF 0.05

%ile 3.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.80 94.6 0.86 Os12g0139300 AK060257.1 - E-class P450, group I family protein 1e-6 At5g05690 CPD (CONSTITUTIVE PHOTOMORPHOGENIC DWARF) O.I. H.G. S.X.
0.30 32.7 0.91 Os02g0733800 AK121645.1 - Nuclear protein SET domain containing protein 3e-16 At1g24610 SET domain-containing protein O.I. H.G. S.X.
0.16 11.3 0.91 Os03g0762700 CB623311 - Conserved hypothetical protein 2e+0 At5g67410 unknown protein O.I. H.G. S.X.
0.09 4.9 0.91 Os09g0421500 AK070023.1 - Conserved hypothetical protein 3e-3 At2g23320 WRKY15 O.I. H.G. S.X.
0.05 2.5 0.93 Os10g0480500 AK066524.1 - Double-stranded RNA binding domain containingprotein 5e-3 At2g28380 DRB2 (DSRNA-BINDING PROTEIN 2) O.I. H.G. S.X.
0.04 2.0 0.92 Os02g0606000 AK058232.1 - - 3e+0 At2g02515 unknown protein O.I. H.G. S.X.
0.04 2.0 0.90 Os10g0437000 CB657474 - Glycosyl transferase, family 14 protein 1e-5 At3g03690 UNE7 (unfertilized embryo sac 7) O.I. H.G. S.X.
0.03 1.4 0.91 Os08g0128300 AK103383.1 - - 1e-9 At1g13180 DIS1 (DISTORTED TRICHOMES 1) O.I. H.G. S.X.
0.01 0.5 0.92 Os02g0819100 AK100156.1 - Zn-finger, DHHC type domain containing protein 7e-7 At3g09320 zinc finger (DHHC type) family protein O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
50.2 99.9 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
29.9 99.7 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
29.8 99.7 GSM195227 Anther GSE7951 Genome-wide gene expression profiling of rice stigma
16.0 98.7 GSM302921 root_rep2 GSE11966 Expression data from rice embryo,endosperm,root,leaf and seedling
8.6 97.8 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.2 97.7 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
8.0 97.6 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.0 97.6 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.8 97.6 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.7 97.6 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.125 1 GO:0015671 The directed movement of oxygen (O2) into, out of, within or between cells.
0.125 1 GO:0042157 The chemical reactions and pathways involving any conjugated, water-soluble protein in which the nonprotein moiety consists of a lipid or lipids.
0.049 1 GO:0006869 The directed movement of lipids into, out of, within or between cells. Lipids are compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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