CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os12g0125000

Gene name
Homology with Arabidopsis Similar to At1g08810: MYB60 (myb domain protein 60) (HF=1e-8)

Module size 13 genes

NF 0.09

%ile 6.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.96 99.7 0.91 Os12g0125000 AK061437.1 - Myb factor 1e-8 At1g08810 MYB60 (myb domain protein 60) O.I. H.G. S.X.
0.29 31.1 0.94 Os04g0545200 9632.m04439 - Conserved hypothetical protein 2e-2 At2g44760 unknown protein O.I. H.G. S.X.
0.23 21.2 0.94 Os07g0100600 AK100112.1 - Peptide transporter 1e-2 At2g02040 PTR2 (PEPTIDE TRANSPORTER 2) O.I. H.G. S.X.
0.18 13.7 0.95 Os06g0301400 9634.m01912 - Hypothetical protein 3e+0 At5g04740 ACT domain-containing protein O.I. H.G. S.X.
0.17 12.6 0.96 Os12g0591600 9640.m03918 - Hypothetical protein 2e-10 At5g42630 ATS (ABERRANT TESTA SHAPE) O.I. H.G. S.X.
0.17 12.6 0.96 Os02g0775900 AK119974.1 - Conserved hypothetical protein 3e-1 At4g27810 unknown protein O.I. H.G. S.X.
0.14 9.3 0.94 Os01g0207600 CB678541 - Conserved hypothetical protein 3e-1 At5g05480 unknown protein O.I. H.G. S.X.
0.14 9.3 0.96 Os01g0680600 NM_192046.1 - - 1e-1 At5g23100 unknown protein O.I. H.G. S.X.
0.07 3.7 0.95 Os01g0601200 AK061398.1 - Ser Thr specific protein kinase-like protein 3e-6 At1g56720 protein kinase family protein O.I. H.G. S.X.
0.06 3.0 0.96 Os04g0636300 AK111459.1 - Aluminum resistance protein 3e+0 At4g29670 thioredoxin family protein O.I. H.G. S.X.
0.04 2.0 0.95 Os01g0829600 AK060725.1 - - 2e-1 At1g03700 - O.I. H.G. S.X.
0.03 1.4 0.96 Os06g0336800 9634.m02262 - - 7e+0 At5g11440 CID5 O.I. H.G. S.X.
0.03 1.4 0.96 Os05g0103300 AK071540.1 - AT.I.24-5 protein (Fragment) 9e-2 At5g63500 unknown protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
23.3 99.4 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
23.1 99.3 GSM195227 Anther GSE7951 Genome-wide gene expression profiling of rice stigma
12.1 98.3 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
11.9 98.3 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.7 98.1 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.0 98.0 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.0 98.0 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.5 97.9 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.1 97.9 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.8 97.8 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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