CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os12g0103700

Gene name
Homology with Arabidopsis Similar to At5g54530: unknown protein (HF=1e+1)

Module size 8 genes

NF 0.17

%ile 14.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.45 58.8 0.78 Os12g0103700 9640.m00030 - - 1e+1 At5g54530 unknown protein O.I. H.G. S.X.
0.42 53.9 0.81 Os08g0164550 9636.m00612 - - 4e+0 At5g57370 unknown protein O.I. H.G. S.X.
0.29 31.1 0.88 Os04g0498100 9632.m04010 - Conserved hypothetical protein 2e-2 At5g39740 60S ribosomal protein L5 (RPL5B) O.I. H.G. S.X.
0.25 24.1 0.89 Os07g0696100 AK071018.1 - Hypothetical protein 6e-1 At2g19550 esterase/lipase/thioesterase family protein O.I. H.G. S.X.
0.15 10.3 0.86 Os11g0261600 AK110921.1 - Hypothetical protein 3e-3 At3g61060 AtPP2-A13 (Arabidopsis thaliana phloem protein 2-A13) O.I. H.G. S.X.
0.13 8.2 0.88 Os07g0646000 AK059345.1 - - 7e-41 At3g06290 - O.I. H.G. S.X.
0.09 4.9 0.83 Os01g0714366 NM_191737.1 - - 1e+1 At5g46730 glycine-rich protein O.I. H.G. S.X.
0.07 3.7 0.82 Os06g0354225 9634.m02436 - - 6e+0 At3g28917 MIF2 (MINI ZINC FINGER 2) O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
61.0 99.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
15.0 98.6 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.2 98.5 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
13.5 98.5 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.3 98.2 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.2 98.2 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.9 98.1 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.4 98.1 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.9 98.0 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
9.6 97.9 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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