CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os12g0103300

Gene name
Homology with Arabidopsis Similar to At5g60460: sec61beta family protein (HF=4e-3)

Module size 6 genes

NF 0.22

%ile 20.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.53 71.3 0.96 Os12g0103300 AU222596 - Protein transport protein SEC61 beta subunit 4e-3 At5g60460 sec61beta family protein O.I. H.G. S.X.
0.50 68.0 0.97 Os09g0541500 AK060244.1 - Longin-like domain containing protein 3e-29 At2g20930 - O.I. H.G. S.X.
0.27 27.5 0.96 Os05g0474400 AK060006.1 - - 6e-1 At3g56110 PRA1.B1 (PRENYLATED RAB ACCEPTOR 1.B1) O.I. H.G. S.X.
0.17 12.6 0.96 Os08g0248900 AK073613.1 - ADP-ribosylation factor 3 2e-46 At2g24765 ARF3 (ADP-RIBOSYLATION FACTOR 3) O.I. H.G. S.X.
0.17 12.6 0.97 Os12g0207300 AF443601.1 - Clathrin coat assembly protein AP17 (Clathrin coatassociated protein AP17) (Plasma membrane adaptor AP-2 17kDa protein) (HA2 17 kDa subunit) (Clathrin assemblyprotein 2 small chain) 9e-55 At1g47830 clathrin coat assembly protein, putative O.I. H.G. S.X.
0.11 6.5 0.97 Os11g0181100 AK100605.1 - Nonaspanin (TM9SF) family protein 2e-70 At1g10950 endomembrane protein 70, putative O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
106.5 100.0 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
44.9 99.9 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
17.1 98.8 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.4 98.8 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.1 98.7 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.2 98.7 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.1 98.6 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.9 98.6 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.8 98.6 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.7 98.6 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.071 1 GO:0007186 The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand.
0.041 2 GO:0006886 The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell.
0.036 1 GO:0007264 Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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