CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os12g0102600

Gene name
Homology with Arabidopsis Similar to At1g30475: - (HF=2e-2)

Module size 9 genes

NF 0.43

%ile 54.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.70 88.4 0.92 Os12g0102600 AK072365.1 - TPR-like domain containing protein 2e-2 At1g30475 - O.I. H.G. S.X.
0.58 77.0 0.93 Os01g0734600 AK103129.1 - UDP-glucuronosyl/UDP-glucosyltransferase familyprotein 1e-3 At1g70470 unknown protein O.I. H.G. S.X.
0.55 73.7 0.93 Os08g0101700 AK061172.1 - Cytochrome b561 1e-1 At1g13930 - O.I. H.G. S.X.
0.53 71.3 0.94 Os04g0507100 AK066402.1 - Conserved hypothetical protein 3e-3 At4g28740 - O.I. H.G. S.X.
0.47 62.3 0.95 Os10g0530500 AF402800.1 - Glutathione S-transferase, C-terminal domaincontaining protein 1e-1 At3g09270 ATGSTU8 (GLUTATHIONE S-TRANSFERASE TAU 8) O.I. H.G. S.X.
0.39 48.3 0.93 Os07g0196200 AK070765.1 - Conserved hypothetical protein 1e-1 At4g23890 unknown protein O.I. H.G. S.X.
0.36 44.0 0.94 Os11g0621400 AK062468.1 - Hypothetical protein 1e+0 At4g34290 SWIB complex BAF60b domain-containing protein O.I. H.G. S.X.
0.27 27.5 0.95 Os04g0657300 CB624212 - Farnesyl pyrophosphate synthetase 2 (FPPsynthetase 2) (FPS 2) (Farnesyl diphosphate synthetase 2)[Includes: Dimethylallyltranstransferase (EC 2.5.1.1) 2e-1 At1g68552 CPuORF53 (Conserved peptide upstream open reading frame 53) O.I. H.G. S.X.
0.24 22.4 0.94 Os02g0556800 AK100187.1 - Conserved hypothetical protein 3e-2 At1g04445 zinc finger (C2H2 type) family protein O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
25.6 99.5 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
18.2 98.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
11.9 98.3 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
8.4 97.7 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.7 97.6 GSM357133 14-day-old seedling, rep 2 GSE14275 Expression data for heat shock in rice seedlings
7.4 97.5 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.2 97.1 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.1 97.1 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.0 97.0 GSM195230 5d-seed GSE7951 Genome-wide gene expression profiling of rice stigma
5.5 96.8 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.105 1 GO:0008299 The chemical reactions and pathways resulting in the formation of any isoprenoid compound, isoprene (2-methylbuta-1,3-diene) or compounds containing or derived from linked isoprene (3-methyl-2-butenylene) residues.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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