CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os11g0689800

Gene name
Homology with Arabidopsis Similar to At5g05420: immunophilin, putative / FKBP-type peptidyl-prolyl cis-trans isomerase, putative (HF=9e-1)

Module size 6 genes

NF 0.52

%ile 68.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.50 68.0 0.92 Os11g0689800 AK119600.1 - Conserved hypothetical protein 9e-1 At5g05420 immunophilin, putative / FKBP-type peptidyl-prolyl cis-trans isomerase, putative O.I. H.G. S.X.
0.55 73.7 0.92 Os05g0543800 AK102850.1 - Hypothetical protein 4e+0 Atmg00720 - O.I. H.G. S.X.
0.50 68.0 0.93 Os02g0599700 AK065211.1 - Protein phosphatase 2C-like domain containingprotein 7e-3 At2g25070 protein phosphatase 2C, putative / PP2C, putative O.I. H.G. S.X.
0.50 68.0 0.93 Os01g0933400 AK070303.1 - Hypothetical protein 7e-1 At1g21600 PTAC6 (PLASTID TRANSCRIPTIONALLY ACTIVE6) O.I. H.G. S.X.
0.40 51.1 0.93 Os03g0180500 AK070949.1 - Conserved hypothetical protein 3e+0 At1g09520 protein binding / zinc ion binding O.I. H.G. S.X.
0.36 44.0 0.92 Os12g0179700 AK120612.1 - Hypothetical protein 1e+0 At2g01464 - O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
70.6 99.9 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
19.3 99.0 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
10.3 98.1 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.5 97.7 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.2 97.7 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.0 97.6 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
7.5 97.5 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.5 97.5 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.1 97.4 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.1 97.4 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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