CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os11g0671700

Gene name
Homology with Arabidopsis Similar to At3g13830: F-box family protein (HF=1e-1)

Module size 6 genes

NF 0.55

%ile 74.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.9 0.99 Os11g0671700 9639.m04167 - - 1e-1 At3g13830 F-box family protein O.I. H.G. S.X.
0.63 82.7 0.99 Os03g0612800 9631.m04004 - - 1e+0 At3g29305 unknown protein O.I. H.G. S.X.
0.55 73.7 0.99 Os12g0211400 9640.m01026 - HhH-GPD family protein 7e-1 At4g17310 unknown protein O.I. H.G. S.X.
0.50 68.0 0.99 Os02g0569700 9630.m03441 - - 2e+0 At5g45830 DOG1 (DELAY OF GERMINATION 1) O.I. H.G. S.X.
0.40 51.1 0.99 Os02g0546050 9630.m03255 - - 1e+1 At4g28750 PSAE-1 (PSA E1 KNOCKOUT) O.I. H.G. S.X.
0.29 31.1 0.99 Os07g0642000 NM_188821.1 - - 9e-4 At1g18680 HNH endonuclease domain-containing protein O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.91	98.9	0.99	Os11g0671700	9639.m04167	-	-	1e-1	At3g13830	F-box family protein	O.I.	H.G.	S.X.
0.63	82.7	0.99	Os03g0612800	9631.m04004	-	-	1e+0	At3g29305	unknown protein	O.I.	H.G.	S.X.
0.55	73.7	0.99	Os12g0211400	9640.m01026	-	HhH-GPD family protein	7e-1	At4g17310	unknown protein	O.I.	H.G.	S.X.
0.50	68.0	0.99	Os02g0569700	9630.m03441	-	-	2e+0	At5g45830	DOG1 (DELAY OF GERMINATION 1)	O.I.	H.G.	S.X.
0.40	51.1	0.99	Os02g0546050	9630.m03255	-	-	1e+1	At4g28750	PSAE-1 (PSA E1 KNOCKOUT)	O.I.	H.G.	S.X.
0.29	31.1	0.99	Os07g0642000	NM_188821.1	-	-	9e-4	At1g18680	HNH endonuclease domain-containing protein	O.I.	H.G.	S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.61	81.2	0.99	Os01g0215601	NM_188446.1	-	-	7e-1	At3g56210	binding	O.I.	H.G.	S.X.
0.60	79.7	0.99	Os12g0273566	9640.m01716	-	-	1e+0	At2g17080	unknown protein	O.I.	H.G.	S.X.
0.57	77.0	0.99	Os05g0502700	9633.m03971	-	-	1e-1	At1g22890	unknown protein	O.I.	H.G.	S.X.
0.55	73.7	0.98	Os07g0546800	9635.m03587	-	-	3e+0	At5g26230	unknown protein	O.I.	H.G.	S.X.
0.50	68.0	0.99	Os12g0286300	9640.m01857	-	-	8e-6	At4g15310	CYP702A3	O.I.	H.G.	S.X.
0.50	68.0	0.99	Os04g0152000	9632.m00594	-	-	2e-4	At5g45530	unknown protein	O.I.	H.G.	S.X.
0.48	63.7	0.98	Os02g0774800	AK072678.1	-	Conserved hypothetical protein	8e-1	At4g16750	DRE-binding transcription factor, putative	O.I.	H.G.	S.X.
0.47	62.3	0.98	Os02g0436600	9630.m02231	-	-	4e-2	At1g02960	unknown protein	O.I.	H.G.	S.X.
0.47	62.3	0.99	Os02g0265100	AK107047.1	-	Hypothetical protein	4e-6	At3g58710	WRKY69	O.I.	H.G.	S.X.
0.44	58.1	0.99	Os08g0334566	9636.m02419	-	-	4e+0	At5g05230	ubiquitin-protein ligase	O.I.	H.G.	S.X.
0.44	58.1	0.99	Os01g0613000	9629.m04103	-	-	3e+0	At3g48330	PIMT1 (PROTEIN-L-ISOASPARTATE METHYLTRANSFERASE 1)	O.I.	H.G.	S.X.
0.42	53.9	0.99	Os01g0244900	NM_188746.1	-	-	2e-1	At2g30560	glycine-rich protein	O.I.	H.G.	S.X.
0.40	51.1	0.97	Os10g0514600	AK070291.1	-	T-complex protein 1 delta subunit	2e-4	At3g18190	chaperonin, putative	O.I.	H.G.	S.X.
0.40	51.1	0.99	Os04g0463300	AK119417.1	-	Pentatricopeptide repeat containing protein	7e-3	At1g09680	pentatricopeptide (PPR) repeat-containing protein	O.I.	H.G.	S.X.
0.40	51.1	0.99	Os04g0469200	9632.m03729	-	Heavy metal transport/detoxification proteindomain containing protein	9e-1	At4g29260	acid phosphatase class B family protein	O.I.	H.G.	S.X.
0.40	51.1	0.99	Os07g0261200	9635.m01571	-	-	4e-1	At5g47080	CKB1	O.I.	H.G.	S.X.
0.40	51.1	0.99	Os07g0453000	NM_187150.1	-	Conserved hypothetical protein	2e+0	At1g50460	HKL1 (HEXOKINASE-LIKE 1)	O.I.	H.G.	S.X.
0.39	48.3	0.98	Os09g0512100	9637.m02904	-	Hypothetical protein	7e+0	At3g06320	ribosomal protein L33 family protein	O.I.	H.G.	S.X.
0.38	46.9	0.98	Os04g0160800	9632.m00698	-	-	3e+0	At3g15030	TCP4 (TCP family transcription factor 4)	O.I.	H.G.	S.X.
0.38	46.9	0.98	Os01g0269800	NM_188044.1	-	Disease resistance protein family protein	6e+0	At5g47220	ERF2 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 2)	O.I.	H.G.	S.X.
0.36	44.0	0.98	Os06g0655600	9634.m04311	-	-	2e+0	At5g28590	DNA-binding protein-related	O.I.	H.G.	S.X.
0.36	44.0	0.98	Os07g0539200	AK119381.1	-	RNA-directed DNA polymerase (Reversetranscriptase) domain containing protein	2e+0	At5g22920	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.
0.36	44.0	0.98	Os10g0186300	9638.m00948	-	-	1e-5	At2g45570	CYP76C2	O.I.	H.G.	S.X.
0.35	41.7	0.97	Os08g0294300	AK069295.1	-	Conserved hypothetical protein	2e+0	At5g62420	aldo/keto reductase family protein	O.I.	H.G.	S.X.
0.33	38.8	0.98	Os02g0298700	9630.m01871	-	-	3e+0	At5g16870	aminoacyl-tRNA hydrolase	O.I.	H.G.	S.X.
0.32	36.3	0.99	Os11g0485700	9639.m02669	-	-	2e+0	At4g23080	unknown protein	O.I.	H.G.	S.X.
0.31	34.5	0.97	Os01g0249700	9629.m01451	-	-	9e-1	At4g18692	unknown protein	O.I.	H.G.	S.X.
0.30	32.7	0.97	Os10g0549600	NM_197649.1	-	-	1e+1	At1g19180	JAZ1 (JASMONATE-ZIM-DOMAIN PROTEIN 1)	O.I.	H.G.	S.X.
0.29	31.1	0.99	Os02g0307700	9630.m01960	-	-	4e+0	At2g10920	unknown protein	O.I.	H.G.	S.X.
0.29	31.1	0.99	Os11g0187600	AK106272.1	-	Heat shock protein 70	9e-7	At5g02500	HSC70-1 (HEAT SHOCK COGNATE PROTEIN 70-1)	O.I.	H.G.	S.X.
0.27	27.5	0.98	Os09g0116250	9637.m00123	-	-	4e+0	At5g35069	unknown protein	O.I.	H.G.	S.X.
0.27	27.5	0.99	Os05g0249900	9633.m01433	-	Conserved hypothetical protein	4e-2	At3g23255	unknown protein	O.I.	H.G.	S.X.
0.27	27.5	0.99	Os02g0322600	9630.m02084	-	-	4e-2	At4g35860	ATGB2 (GTP-BINDING 2)	O.I.	H.G.	S.X.
0.26	25.6	0.98	Os10g0107200	9638.m00082	-	-	2e+0	At1g52480	-	O.I.	H.G.	S.X.
0.26	25.6	0.99	Os07g0150000	9635.m00494	-	TPR-like domain containing protein	2e-1	At3g02010	pentatricopeptide (PPR) repeat-containing protein	O.I.	H.G.	S.X.
0.25	24.1	0.98	Os08g0199200	AK063127.1	-	Conserved hypothetical protein	2e-1	At5g04386	unknown protein	O.I.	H.G.	S.X.
0.25	24.1	0.98	Os01g0376800	9629.m02667	-	-	4e-1	At1g78260	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.
0.25	24.1	0.98	Os01g0697700	9629.m04862	-	C2 calcium/lipid-binding region, CaLB domaincontaining protein	2e+1	At5g65320	basic helix-loop-helix (bHLH) family protein	O.I.	H.G.	S.X.
0.25	24.1	0.99	Os10g0162500	9638.m00667	-	-	2e+1	At5g19030	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.
0.25	24.1	0.99	Os08g0315200	AK106325.1	-	Retrotransposon gag protein family protein	1e+0	At2g27710	60S acidic ribosomal protein P2 (RPP2B)	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
71.6 99.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
20.1 99.1 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
18.0 98.9 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
17.8 98.9 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
17.7 98.9 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
17.0 98.8 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.2 98.8 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.7 98.7 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.0 98.6 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.8 98.6 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
71.6	99.9	GSM422672	Drought	GSE16865	Heterologous microarrays for the study of drought stress in Musa
20.1	99.1	GSM422674	Musa_DNA_RICE	GSE16865	Heterologous microarrays for the study of drought stress in Musa
18.0	98.9	GSM377085	Genomic DNA - 45 day old leaf sample - mutant f2045	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
17.8	98.9	GSM377075	Genomic DNA - 45 day old leaf sample - mutant g650	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
17.7	98.9	GSM377070	Genomic DNA - 45 day old leaf sample - mutant d1	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
17.0	98.8	GSM377073	Genomic DNA - 45 day old leaf sample - mutant d2943	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.2	98.8	GSM377084	Genomic DNA - 45 day old leaf sample - mutant f1856	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.7	98.7	GSM377076	Genomic DNA - 45 day old leaf sample - mutant g6485	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.0	98.6	GSM377074	Genomic DNA - 45 day old leaf sample - mutant g282	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.8	98.6	GSM377071	Genomic DNA - 45 day old leaf sample - mutant d256	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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Gene ID	Os11g0671700
Gene name
Homology with Arabidopsis	Similar to At3g13830: F-box family protein (HF=1e-1)
Module size	6 genes
NF	0.55
%ile	74.1

Co-expression analysis

Gene ID Os11g0671700 Gene name Homology with ArabidopsisSimilar to At3g13830: F-box family protein (HF=1e-1) Module size 6 genes NF 0.55 %ile 74.1

Co-expressed genes

Specific experiments for the module

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgarePopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID Os11g0671700

Gene name
Homology with Arabidopsis Similar to At3g13830: F-box family protein (HF=1e-1)

Module size 6 genes

NF 0.55

%ile 74.1

SF Genes GO ID Process Name Link to AmiGO

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays