CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os11g0671700

Gene name
Homology with Arabidopsis Similar to At3g13830: F-box family protein (HF=1e-1)

Module size 6 genes

NF 0.55

%ile 74.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.9 0.99 Os11g0671700 9639.m04167 - - 1e-1 At3g13830 F-box family protein O.I. H.G. S.X.
0.63 82.7 0.99 Os03g0612800 9631.m04004 - - 1e+0 At3g29305 unknown protein O.I. H.G. S.X.
0.55 73.7 0.99 Os12g0211400 9640.m01026 - HhH-GPD family protein 7e-1 At4g17310 unknown protein O.I. H.G. S.X.
0.50 68.0 0.99 Os02g0569700 9630.m03441 - - 2e+0 At5g45830 DOG1 (DELAY OF GERMINATION 1) O.I. H.G. S.X.
0.40 51.1 0.99 Os02g0546050 9630.m03255 - - 1e+1 At4g28750 PSAE-1 (PSA E1 KNOCKOUT) O.I. H.G. S.X.
0.29 31.1 0.99 Os07g0642000 NM_188821.1 - - 9e-4 At1g18680 HNH endonuclease domain-containing protein O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.91	98.9	0.99	Os11g0671700	9639.m04167	-	-	1e-1	At3g13830	F-box family protein	O.I.	H.G.	S.X.
0.63	82.7	0.99	Os03g0612800	9631.m04004	-	-	1e+0	At3g29305	unknown protein	O.I.	H.G.	S.X.
0.55	73.7	0.99	Os12g0211400	9640.m01026	-	HhH-GPD family protein	7e-1	At4g17310	unknown protein	O.I.	H.G.	S.X.
0.50	68.0	0.99	Os02g0569700	9630.m03441	-	-	2e+0	At5g45830	DOG1 (DELAY OF GERMINATION 1)	O.I.	H.G.	S.X.
0.40	51.1	0.99	Os02g0546050	9630.m03255	-	-	1e+1	At4g28750	PSAE-1 (PSA E1 KNOCKOUT)	O.I.	H.G.	S.X.
0.29	31.1	0.99	Os07g0642000	NM_188821.1	-	-	9e-4	At1g18680	HNH endonuclease domain-containing protein	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
71.6 99.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
20.1 99.1 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
18.0 98.9 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
17.8 98.9 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
17.7 98.9 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
17.0 98.8 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.2 98.8 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.7 98.7 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.0 98.6 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.8 98.6 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
71.6	99.9	GSM422672	Drought	GSE16865	Heterologous microarrays for the study of drought stress in Musa
20.1	99.1	GSM422674	Musa_DNA_RICE	GSE16865	Heterologous microarrays for the study of drought stress in Musa
18.0	98.9	GSM377085	Genomic DNA - 45 day old leaf sample - mutant f2045	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
17.8	98.9	GSM377075	Genomic DNA - 45 day old leaf sample - mutant g650	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
17.7	98.9	GSM377070	Genomic DNA - 45 day old leaf sample - mutant d1	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
17.0	98.8	GSM377073	Genomic DNA - 45 day old leaf sample - mutant d2943	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.2	98.8	GSM377084	Genomic DNA - 45 day old leaf sample - mutant f1856	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.7	98.7	GSM377076	Genomic DNA - 45 day old leaf sample - mutant g6485	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.0	98.6	GSM377074	Genomic DNA - 45 day old leaf sample - mutant g282	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.8	98.6	GSM377071	Genomic DNA - 45 day old leaf sample - mutant d256	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

A co-expression module including the maize gene, Zm.9667.1.A1_at, orthologous to the query gene, Os11g0671700

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.61 79.5 Zm.9667.1.A1_at At3g13830 transcription factor MYB42 - 1e+0 At3g48490 unknown protein O.I. H.G. S.X.
0.52 67.3 Zm.18082.1.S1_at At3g13830 hypothetical protein LOC100277280 - 7e-1 At2g39440 - O.I. H.G. S.X.
0.40 48.5 Zm.15436.1.S1_at At3g13830 - - 2e+0 At5g37750 heat shock protein binding / unfolded protein binding O.I. H.G. S.X.
0.38 44.2 Zm.9319.1.A1_at At3g13830 hypothetical protein LOC100216855 - 2e+0 At5g10000 ATFD4 (ferredoxin 4) O.I. H.G. S.X.
0.35 38.9 Zm.8565.1.S1_at At3g13830 hypothetical protein LOC100279882 - 8e-7 At2g01110 APG2 (ALBINO AND PALE GREEN 2) O.I. H.G. S.X.
0.32 33.4 Zm.9405.1.A1_at At3g13830 - - 1e-1 At1g54970 ATPRP1 (PROLINE-RICH PROTEIN 1) O.I. H.G. S.X.
0.32 33.4 Zm.15276.1.A1_at At3g13830 - - 3e-3 At1g12665 - O.I. H.G. S.X.
0.29 28.1 Zm.15903.1.S1_at At3g13830 phenylalanine ammonia-lyase - 2e-14 At3g10340 PAL4 (Phenylalanine ammonia-lyase 4) O.I. H.G. S.X.
0.29 28.1 Zm.12318.1.A1_at At3g13830 pre-mRNA processing factor - 1e-3 At5g38600 proline-rich spliceosome-associated (PSP) family protein / zinc knuckle (CCHC-type) family protein O.I. H.G. S.X.
0.28 28.1 Zm.7151.1.A1_at At3g13830 - - 3e-9 At1g72330 ALAAT2 (ALANINE AMINOTRANSFERASE 2) O.I. H.G. S.X.
0.27 24.6 Zm.8563.1.A1_at At3g13830 hypothetical protein LOC100193983 - 9e-15 At1g23110 unknown protein O.I. H.G. S.X.
0.22 16.9 Zm.187.1.S1_at At3g13830 anionic peroxidase - 1e-5 At5g40150 peroxidase, putative O.I. H.G. S.X.
0.18 11.6 ZmAffx.549.1.S1_at At3g13830 - - 3e+0 At1g22067 unknown protein O.I. H.G. S.X.
0.15 8.6 Zm.8772.1.A1_at At3g13830 hypothetical protein LOC100192757 - 2e-38 At5g54080 HGO (HOMOGENTISATE 1,2-DIOXYGENASE) O.I. H.G. S.X.
0.14 7.7 ZmAffx.921.1.A1_at At3g13830 - - 3e+0 At3g15900 unknown protein O.I. H.G. S.X.
0.13 6.8 Zm.17367.1.A1_at At3g13830 protein Mo25 - 4e-4 At5g18940 Mo25 family protein O.I. H.G. S.X.
0.12 5.9 ZmAffx.799.1.A1_at At3g13830 - - 5e-2 At1g75080 BZR1 (BRASSINAZOLE-RESISTANT 1) O.I. H.G. S.X.
0.12 5.9 Zm.13926.1.A1_at At3g13830 - - 7e-1 At3g24506 unknown protein O.I. H.G. S.X.
0.11 5.3 Zm.4295.1.A1_at At3g13830 universal stress protein family protein - 4e-2 At1g44760 universal stress protein (USP) family protein O.I. H.G. S.X.

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.61	79.5	Zm.9667.1.A1_at	At3g13830	transcription factor MYB42	-	1e+0	At3g48490	unknown protein	O.I.	H.G.	S.X.
0.52	67.3	Zm.18082.1.S1_at	At3g13830	hypothetical protein LOC100277280	-	7e-1	At2g39440	-	O.I.	H.G.	S.X.
0.40	48.5	Zm.15436.1.S1_at	At3g13830	-	-	2e+0	At5g37750	heat shock protein binding / unfolded protein binding	O.I.	H.G.	S.X.
0.38	44.2	Zm.9319.1.A1_at	At3g13830	hypothetical protein LOC100216855	-	2e+0	At5g10000	ATFD4 (ferredoxin 4)	O.I.	H.G.	S.X.
0.35	38.9	Zm.8565.1.S1_at	At3g13830	hypothetical protein LOC100279882	-	8e-7	At2g01110	APG2 (ALBINO AND PALE GREEN 2)	O.I.	H.G.	S.X.
0.32	33.4	Zm.9405.1.A1_at	At3g13830	-	-	1e-1	At1g54970	ATPRP1 (PROLINE-RICH PROTEIN 1)	O.I.	H.G.	S.X.
0.32	33.4	Zm.15276.1.A1_at	At3g13830	-	-	3e-3	At1g12665	-	O.I.	H.G.	S.X.
0.29	28.1	Zm.15903.1.S1_at	At3g13830	phenylalanine ammonia-lyase	-	2e-14	At3g10340	PAL4 (Phenylalanine ammonia-lyase 4)	O.I.	H.G.	S.X.
0.29	28.1	Zm.12318.1.A1_at	At3g13830	pre-mRNA processing factor	-	1e-3	At5g38600	proline-rich spliceosome-associated (PSP) family protein / zinc knuckle (CCHC-type) family protein	O.I.	H.G.	S.X.
0.28	28.1	Zm.7151.1.A1_at	At3g13830	-	-	3e-9	At1g72330	ALAAT2 (ALANINE AMINOTRANSFERASE 2)	O.I.	H.G.	S.X.
0.27	24.6	Zm.8563.1.A1_at	At3g13830	hypothetical protein LOC100193983	-	9e-15	At1g23110	unknown protein	O.I.	H.G.	S.X.
0.22	16.9	Zm.187.1.S1_at	At3g13830	anionic peroxidase	-	1e-5	At5g40150	peroxidase, putative	O.I.	H.G.	S.X.
0.18	11.6	ZmAffx.549.1.S1_at	At3g13830	-	-	3e+0	At1g22067	unknown protein	O.I.	H.G.	S.X.
0.15	8.6	Zm.8772.1.A1_at	At3g13830	hypothetical protein LOC100192757	-	2e-38	At5g54080	HGO (HOMOGENTISATE 1,2-DIOXYGENASE)	O.I.	H.G.	S.X.
0.14	7.7	ZmAffx.921.1.A1_at	At3g13830	-	-	3e+0	At3g15900	unknown protein	O.I.	H.G.	S.X.
0.13	6.8	Zm.17367.1.A1_at	At3g13830	protein Mo25	-	4e-4	At5g18940	Mo25 family protein	O.I.	H.G.	S.X.
0.12	5.9	ZmAffx.799.1.A1_at	At3g13830	-	-	5e-2	At1g75080	BZR1 (BRASSINAZOLE-RESISTANT 1)	O.I.	H.G.	S.X.
0.12	5.9	Zm.13926.1.A1_at	At3g13830	-	-	7e-1	At3g24506	unknown protein	O.I.	H.G.	S.X.
0.11	5.3	Zm.4295.1.A1_at	At3g13830	universal stress protein family protein	-	4e-2	At1g44760	universal stress protein (USP) family protein	O.I.	H.G.	S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera

Back to the CoP portal site

Back to the KAGIANA project homepage

Gene ID	Os11g0671700
Gene name
Homology with Arabidopsis	Similar to At3g13830: F-box family protein (HF=1e-1)
Module size	6 genes
NF	0.55
%ile	74.1

Co-expression analysis

Gene ID Os11g0671700 Gene name Homology with ArabidopsisSimilar to At3g13830: F-box family protein (HF=1e-1) Module size 6 genes NF 0.55 %ile 74.1

Co-expressed genes

Click More genes

Specific experiments for the module

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgarePopulus_trichocarpaTriticum_aestivumVitis_vinifera

Gene ID Os11g0671700

Gene name
Homology with Arabidopsis Similar to At3g13830: F-box family protein (HF=1e-1)

Module size 6 genes

NF 0.55

%ile 74.1

SF Genes GO ID Process Name Link to AmiGO

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera