CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os11g0671700

Gene name
Homology with Arabidopsis Similar to At3g13830: F-box family protein (HF=1e-1)

Module size 6 genes

NF 0.55

%ile 74.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.9 0.99 Os11g0671700 9639.m04167 - - 1e-1 At3g13830 F-box family protein O.I. H.G. S.X.
0.63 82.7 0.99 Os03g0612800 9631.m04004 - - 1e+0 At3g29305 unknown protein O.I. H.G. S.X.
0.55 73.7 0.99 Os12g0211400 9640.m01026 - HhH-GPD family protein 7e-1 At4g17310 unknown protein O.I. H.G. S.X.
0.50 68.0 0.99 Os02g0569700 9630.m03441 - - 2e+0 At5g45830 DOG1 (DELAY OF GERMINATION 1) O.I. H.G. S.X.
0.40 51.1 0.99 Os02g0546050 9630.m03255 - - 1e+1 At4g28750 PSAE-1 (PSA E1 KNOCKOUT) O.I. H.G. S.X.
0.29 31.1 0.99 Os07g0642000 NM_188821.1 - - 9e-4 At1g18680 HNH endonuclease domain-containing protein O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.91	98.9	0.99	Os11g0671700	9639.m04167	-	-	1e-1	At3g13830	F-box family protein	O.I.	H.G.	S.X.
0.63	82.7	0.99	Os03g0612800	9631.m04004	-	-	1e+0	At3g29305	unknown protein	O.I.	H.G.	S.X.
0.55	73.7	0.99	Os12g0211400	9640.m01026	-	HhH-GPD family protein	7e-1	At4g17310	unknown protein	O.I.	H.G.	S.X.
0.50	68.0	0.99	Os02g0569700	9630.m03441	-	-	2e+0	At5g45830	DOG1 (DELAY OF GERMINATION 1)	O.I.	H.G.	S.X.
0.40	51.1	0.99	Os02g0546050	9630.m03255	-	-	1e+1	At4g28750	PSAE-1 (PSA E1 KNOCKOUT)	O.I.	H.G.	S.X.
0.29	31.1	0.99	Os07g0642000	NM_188821.1	-	-	9e-4	At1g18680	HNH endonuclease domain-containing protein	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
71.6 99.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
20.1 99.1 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
18.0 98.9 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
17.8 98.9 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
17.7 98.9 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
17.0 98.8 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.2 98.8 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.7 98.7 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.0 98.6 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.8 98.6 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
71.6	99.9	GSM422672	Drought	GSE16865	Heterologous microarrays for the study of drought stress in Musa
20.1	99.1	GSM422674	Musa_DNA_RICE	GSE16865	Heterologous microarrays for the study of drought stress in Musa
18.0	98.9	GSM377085	Genomic DNA - 45 day old leaf sample - mutant f2045	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
17.8	98.9	GSM377075	Genomic DNA - 45 day old leaf sample - mutant g650	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
17.7	98.9	GSM377070	Genomic DNA - 45 day old leaf sample - mutant d1	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
17.0	98.8	GSM377073	Genomic DNA - 45 day old leaf sample - mutant d2943	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.2	98.8	GSM377084	Genomic DNA - 45 day old leaf sample - mutant f1856	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.7	98.7	GSM377076	Genomic DNA - 45 day old leaf sample - mutant g6485	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.0	98.6	GSM377074	Genomic DNA - 45 day old leaf sample - mutant g282	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.8	98.6	GSM377071	Genomic DNA - 45 day old leaf sample - mutant d256	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.210792.1.S1_at, orthologous to the query gene, Os11g0671700

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.68 91.3 PtpAffx.210792.1.S1_at At3g13830 hypothetical protein - 5e-2 At5g63740 zinc finger protein-related O.I. H.G. S.X.
0.43 69.7 PtpAffx.10648.2.S1_a_at At3g13830 hypothetical protein - 3e-90 At5g27840 TOPP8 O.I. H.G. S.X.
0.33 57.5 PtpAffx.44.1.S1_a_at At3g13830 hypothetical protein - 5e-1 At1g21810 - O.I. H.G. S.X.
0.29 50.5 Ptp.6693.1.S1_s_at At3g13830 copper transporter - 9e-2 At5g59030 COPT1 (copper transporter 1) O.I. H.G. S.X.
0.24 41.8 PtpAffx.218447.1.S1_at At3g13830 hypothetical protein - 1e-11 At1g16670 protein kinase family protein O.I. H.G. S.X.
0.23 40.5 Ptp.8026.1.A1_at At3g13830 hypothetical protein - 4e+0 At4g10450 60S ribosomal protein L9 (RPL90D) O.I. H.G. S.X.
0.21 36.5 PtpAffx.152326.1.S1_s_at At3g13830 hypothetical protein - 5e-10 At2g47060 serine/threonine protein kinase, putative O.I. H.G. S.X.
0.19 32.7 PtpAffx.131744.1.S1_at At3g13830 hypothetical protein - 3e-55 At2g06530 VPS2.1 O.I. H.G. S.X.
0.18 30.8 PtpAffx.221019.1.S1_at At3g13830 - - 1e-13 At5g18070 DRT101 (DNA-DAMAGE-REPAIR/TOLERATION 101) O.I. H.G. S.X.
0.16 26.9 PtpAffx.107907.1.A1_at At3g13830 hypothetical protein - 9e-1 At3g54940 - O.I. H.G. S.X.
0.15 25.3 PtpAffx.29180.1.S1_s_at At3g13830 hypothetical protein - 6e-1 At4g20820 FAD-binding domain-containing protein O.I. H.G. S.X.
0.15 25.3 Ptp.5098.1.S1_s_at At3g13830 hypothetical protein - 3e-14 At3g55960 NLI interacting factor (NIF) family protein O.I. H.G. S.X.
0.15 25.3 PtpAffx.125271.1.S1_s_at At3g13830 hypothetical protein - 1e+0 At4g22620 auxin-responsive family protein O.I. H.G. S.X.
0.14 23.5 PtpAffx.13062.1.A1_s_at At3g13830 f-box family protein - 5e-1 At2g27229 unknown protein O.I. H.G. S.X.
0.14 23.5 Ptp.782.1.S1_s_at At3g13830 hypothetical protein - 7e-8 At4g27480 glycosyltransferase family 14 protein / core-2/I-branching enzyme family protein O.I. H.G. S.X.
0.13 21.6 PtpAffx.207576.1.S1_s_at At3g13830 hypothetical protein - 4e-45 At5g04560 DME (DEMETER) O.I. H.G. S.X.
0.13 21.6 PtpAffx.152326.2.S1_s_at At3g13830 hypothetical protein - 4e-16 At3g17410 serine/threonine protein kinase, putative O.I. H.G. S.X.
0.12 19.6 PtpAffx.32207.1.S1_at At3g13830 hypothetical protein - 5e-10 At2g43780 unknown protein O.I. H.G. S.X.
0.09 14.6 PtpAffx.68656.1.S1_at At3g13830 hypothetical protein - 1e+0 At5g09220 AAP2 (AMINO ACID PERMEASE 2) O.I. H.G. S.X.
0.08 12.9 PtpAffx.224603.1.S1_at At3g13830 hypothetical protein - 7e-34 At1g70740 protein kinase family protein O.I. H.G. S.X.
0.07 11.6 Ptp.4301.1.S1_s_at At3g13830 - - 6e-4 At2g22080 unknown protein O.I. H.G. S.X.

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.68	91.3	PtpAffx.210792.1.S1_at	At3g13830	hypothetical protein	-	5e-2	At5g63740	zinc finger protein-related	O.I.	H.G.	S.X.
0.43	69.7	PtpAffx.10648.2.S1_a_at	At3g13830	hypothetical protein	-	3e-90	At5g27840	TOPP8	O.I.	H.G.	S.X.
0.33	57.5	PtpAffx.44.1.S1_a_at	At3g13830	hypothetical protein	-	5e-1	At1g21810	-	O.I.	H.G.	S.X.
0.29	50.5	Ptp.6693.1.S1_s_at	At3g13830	copper transporter	-	9e-2	At5g59030	COPT1 (copper transporter 1)	O.I.	H.G.	S.X.
0.24	41.8	PtpAffx.218447.1.S1_at	At3g13830	hypothetical protein	-	1e-11	At1g16670	protein kinase family protein	O.I.	H.G.	S.X.
0.23	40.5	Ptp.8026.1.A1_at	At3g13830	hypothetical protein	-	4e+0	At4g10450	60S ribosomal protein L9 (RPL90D)	O.I.	H.G.	S.X.
0.21	36.5	PtpAffx.152326.1.S1_s_at	At3g13830	hypothetical protein	-	5e-10	At2g47060	serine/threonine protein kinase, putative	O.I.	H.G.	S.X.
0.19	32.7	PtpAffx.131744.1.S1_at	At3g13830	hypothetical protein	-	3e-55	At2g06530	VPS2.1	O.I.	H.G.	S.X.
0.18	30.8	PtpAffx.221019.1.S1_at	At3g13830	-	-	1e-13	At5g18070	DRT101 (DNA-DAMAGE-REPAIR/TOLERATION 101)	O.I.	H.G.	S.X.
0.16	26.9	PtpAffx.107907.1.A1_at	At3g13830	hypothetical protein	-	9e-1	At3g54940	-	O.I.	H.G.	S.X.
0.15	25.3	PtpAffx.29180.1.S1_s_at	At3g13830	hypothetical protein	-	6e-1	At4g20820	FAD-binding domain-containing protein	O.I.	H.G.	S.X.
0.15	25.3	Ptp.5098.1.S1_s_at	At3g13830	hypothetical protein	-	3e-14	At3g55960	NLI interacting factor (NIF) family protein	O.I.	H.G.	S.X.
0.15	25.3	PtpAffx.125271.1.S1_s_at	At3g13830	hypothetical protein	-	1e+0	At4g22620	auxin-responsive family protein	O.I.	H.G.	S.X.
0.14	23.5	PtpAffx.13062.1.A1_s_at	At3g13830	f-box family protein	-	5e-1	At2g27229	unknown protein	O.I.	H.G.	S.X.
0.14	23.5	Ptp.782.1.S1_s_at	At3g13830	hypothetical protein	-	7e-8	At4g27480	glycosyltransferase family 14 protein / core-2/I-branching enzyme family protein	O.I.	H.G.	S.X.
0.13	21.6	PtpAffx.207576.1.S1_s_at	At3g13830	hypothetical protein	-	4e-45	At5g04560	DME (DEMETER)	O.I.	H.G.	S.X.
0.13	21.6	PtpAffx.152326.2.S1_s_at	At3g13830	hypothetical protein	-	4e-16	At3g17410	serine/threonine protein kinase, putative	O.I.	H.G.	S.X.
0.12	19.6	PtpAffx.32207.1.S1_at	At3g13830	hypothetical protein	-	5e-10	At2g43780	unknown protein	O.I.	H.G.	S.X.
0.09	14.6	PtpAffx.68656.1.S1_at	At3g13830	hypothetical protein	-	1e+0	At5g09220	AAP2 (AMINO ACID PERMEASE 2)	O.I.	H.G.	S.X.
0.08	12.9	PtpAffx.224603.1.S1_at	At3g13830	hypothetical protein	-	7e-34	At1g70740	protein kinase family protein	O.I.	H.G.	S.X.
0.07	11.6	Ptp.4301.1.S1_s_at	At3g13830	-	-	6e-4	At2g22080	unknown protein	O.I.	H.G.	S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Triticum_aestivum
Vitis_vinifera
Zea_mays

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Gene ID	Os11g0671700
Gene name
Homology with Arabidopsis	Similar to At3g13830: F-box family protein (HF=1e-1)
Module size	6 genes
NF	0.55
%ile	74.1

Co-expression analysis

Gene ID Os11g0671700 Gene name Homology with ArabidopsisSimilar to At3g13830: F-box family protein (HF=1e-1) Module size 6 genes NF 0.55 %ile 74.1

Co-expressed genes

Click More genes

Specific experiments for the module

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgareTriticum_aestivumVitis_viniferaZea_mays

Gene ID Os11g0671700

Gene name
Homology with Arabidopsis Similar to At3g13830: F-box family protein (HF=1e-1)

Module size 6 genes

NF 0.55

%ile 74.1

SF Genes GO ID Process Name Link to AmiGO

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Triticum_aestivum
Vitis_vinifera
Zea_mays