CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os11g0671700

Gene name
Homology with Arabidopsis Similar to At3g13830: F-box family protein (HF=1e-1)

Module size 6 genes

NF 0.55

%ile 74.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.9 0.99 Os11g0671700 9639.m04167 - - 1e-1 At3g13830 F-box family protein O.I. H.G. S.X.
0.63 82.7 0.99 Os03g0612800 9631.m04004 - - 1e+0 At3g29305 unknown protein O.I. H.G. S.X.
0.55 73.7 0.99 Os12g0211400 9640.m01026 - HhH-GPD family protein 7e-1 At4g17310 unknown protein O.I. H.G. S.X.
0.50 68.0 0.99 Os02g0569700 9630.m03441 - - 2e+0 At5g45830 DOG1 (DELAY OF GERMINATION 1) O.I. H.G. S.X.
0.40 51.1 0.99 Os02g0546050 9630.m03255 - - 1e+1 At4g28750 PSAE-1 (PSA E1 KNOCKOUT) O.I. H.G. S.X.
0.29 31.1 0.99 Os07g0642000 NM_188821.1 - - 9e-4 At1g18680 HNH endonuclease domain-containing protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
71.6 99.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
20.1 99.1 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
18.0 98.9 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
17.8 98.9 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
17.7 98.9 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
17.0 98.8 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.2 98.8 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.7 98.7 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.0 98.6 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.8 98.6 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

A co-expression module including the barley gene, Contig3265_s_at, orthologous to the query gene, Os11g0671700

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.1 Contig3265_s_at At3g13830 - - 3e-2 At2g35910 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.87 95.0 Contig5242_at At3g13830 - - 3e-1 At2g30560 glycine-rich protein O.I. H.G. S.X.
0.83 94.0 Contig5342_at At3g13830 - - 4e-3 At3g56150 EIF3C (EUKARYOTIC TRANSLATION INITIATION FACTOR 3C) O.I. H.G. S.X.
0.82 93.1 Contig3963_s_at At3g13830 - - 7e-39 At4g19210 ATRLI2 O.I. H.G. S.X.
0.75 89.5 HA28J12r_s_at At3g13830 - - 1e+0 At3g23255 unknown protein O.I. H.G. S.X.
0.72 87.4 Contig3856_at At3g13830 - - 1e-19 At1g52600 signal peptidase, putative O.I. H.G. S.X.
0.72 87.4 Contig2826_at At3g13830 - - 1e-21 At3g44110 ATJ3 O.I. H.G. S.X.
0.72 87.4 Contig8436_s_at At3g13830 - - 7e-2 At5g40950 RPL27 (RIBOSOMAL PROTEIN LARGE SUBUNIT 27) O.I. H.G. S.X.
0.70 86.0 HV05M01u_x_at At3g13830 - - 8e+0 At5g41700 UBC8 (UBIQUITIN CONJUGATING ENZYME 8) O.I. H.G. S.X.
0.70 86.0 Contig5574_at At3g13830 - - 2e-11 At4g30210 ATR2 (ARABIDOPSIS P450 REDUCTASE 2) O.I. H.G. S.X.
0.56 74.3 Contig4494_s_at At3g13830 - - 5e+0 At5g55508 unknown protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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