CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os11g0652100

Gene name
Homology with Arabidopsis Similar to At2g43550: trypsin inhibitor, putative (HF=6e-1)

Module size 6 genes

NF 0.06

%ile 3.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.9 0.88 Os11g0652100 AK103061.1 - Hypothetical protein 6e-1 At2g43550 trypsin inhibitor, putative O.I. H.G. S.X.
0.06 3.0 0.94 Os01g0303200 AK073769.1 - Conserved hypothetical protein 2e-58 At1g35220 unknown protein O.I. H.G. S.X.
0.05 2.5 0.94 Os02g0301800 AK067818.1 - Disease resistance protein family protein 5e-1 At5g20310 - O.I. H.G. S.X.
0.04 2.0 0.93 Os03g0366700 9631.m02452 - Conserved hypothetical protein 6e-7 At2g41150 unknown protein O.I. H.G. S.X.
0.04 2.0 0.93 Os05g0387800 AK101626.1 - GCN5-related N-acetyltransferase domain containingprotein 9e-1 At5g42905 nucleic acid binding / ribonuclease H O.I. H.G. S.X.
0.03 1.4 0.93 Os01g0758900 AK067793.1 - Conserved hypothetical protein 8e-2 At3g07220 transcriptional activator, putative O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
16.7 98.8 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.9 98.6 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
14.9 98.6 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.5 98.6 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.3 98.6 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.3 98.6 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.2 98.5 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.9 98.5 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.7 98.5 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.7 98.5 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.015 1 GO:0006952 Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack.
0.012 1 GO:0006915 A form of programmed cell death that begins when a cell receives internal or external signals that trigger the activity of proteolytic caspases, proceeds through a series of characteristic stages typically including rounding-up of the cell, retraction of pseudopodes, reduction of cellular volume (pyknosis), chromatin condensation, nuclear fragmentation (karyorrhexis), and plasma membrane blebbing (but maintenance of its integrity until the final stages of the process), and ends with the death of the cell.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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