CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os11g0633100

Gene name
Homology with Arabidopsis Similar to At1g21500: unknown protein (HF=9e-1)

Module size 6 genes

NF 0.03

%ile 1.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.59 78.0 0.82 Os11g0633100 9639.m03815 - - 9e-1 At1g21500 unknown protein O.I. H.G. S.X.
0.23 21.2 0.85 Os10g0579400 AK108346.1 - The start codon is not identified. 2e-9 At1g30650 WRKY14 O.I. H.G. S.X.
0.19 15.1 0.91 Os05g0304900 AK105545.1 - Glycoside hydrolase, family 10 protein 1e-12 At4g38300 glycosyl hydrolase family 10 protein O.I. H.G. S.X.
0.14 9.3 0.88 Os07g0222200 AK107502.1 - Protein of unknown function DUF594 family protein 4e-4 At2g39830 DAR2 (DA1-RELATED PROTEIN 2) O.I. H.G. S.X.
0.11 6.5 0.86 Os02g0652100 AK072906.1 - The start codon is not identified. 4e-1 At2g44745 WRKY family transcription factor O.I. H.G. S.X.
0.01 0.5 0.88 Os05g0119600 AK110829.1 - Conserved hypothetical protein 2e-1 At2g44580 protein binding / zinc ion binding O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
15.3 98.7 GSM195229 Endosperm GSE7951 Genome-wide gene expression profiling of rice stigma
11.4 98.2 GSM240998 gif1 7 DAF, biological replicate 2 GSE9498 Global gene expression profiles of Oryza sativa wild type Zhonghua11 and mutant gif1 in filling stage
11.1 98.2 GSM240997 gif1 7 DAF, biological replicate 1 GSE9498 Global gene expression profiles of Oryza sativa wild type Zhonghua11 and mutant gif1 in filling stage
10.8 98.1 GSM240995 Zhonghua11 7 DAF, biological replicate 2 GSE9498 Global gene expression profiles of Oryza sativa wild type Zhonghua11 and mutant gif1 in filling stage
9.5 97.9 GSM159221 Seed (S5, 21 - 29 dap), biological rep 3 GSE6893 Expression data for reproductive development in rice
8.8 97.8 GSM240996 Zhonghua11 7 DAF, biological replicate 3 GSE9498 Global gene expression profiles of Oryza sativa wild type Zhonghua11 and mutant gif1 in filling stage
8.8 97.8 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.9 97.6 GSM240999 gif1 7 DAF, biological replicate 3 GSE9498 Global gene expression profiles of Oryza sativa wild type Zhonghua11 and mutant gif1 in filling stage
7.8 97.6 GSM159219 Seed (S5, 21 - 29 dap), biological rep 1 GSE6893 Expression data for reproductive development in rice
7.8 97.6 GSM302916 endo6D_rep1 GSE11966 Expression data from rice embryo,endosperm,root,leaf and seedling

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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