CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os11g0626700

Gene name
Homology with Arabidopsis Similar to At5g05500: pollen Ole e 1 allergen and extensin family protein (HF=1e+1)

Module size 7 genes

NF 0.20

%ile 18.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.44 58.1 0.77 Os11g0626700 AK120168.1 - Hypothetical protein 1e+1 At5g05500 pollen Ole e 1 allergen and extensin family protein O.I. H.G. S.X.
0.40 51.1 0.85 Os07g0510800 AK058358.1 - RNA-directed DNA polymerase (Reversetranscriptase) domain containing protein 1e-1 At5g07600 oleosin / glycine-rich protein O.I. H.G. S.X.
0.36 44.0 0.87 Os08g0413500 CB665620 - Protein of unknown function DUF1262 family protein 6e-1 At1g22940 TH1 (THIAMINE REQUIRING 1) O.I. H.G. S.X.
0.18 13.7 0.81 Os02g0609900 9630.m03819 - Leucine-rich repeat, typical subtype containingprotein 3e+0 At5g07280 EMS1 (EXCESS MICROSPOROCYTES1) O.I. H.G. S.X.
0.17 12.6 0.83 Os12g0248600 AK062531.1 - Hypothetical protein 4e+0 At3g52740 unknown protein O.I. H.G. S.X.
0.10 5.7 0.80 Os01g0601700 AK072103.1 - Leucine-rich repeat, typical subtype containingprotein 6e+0 At5g67060 HEC1 (HECATE 1) O.I. H.G. S.X.
0.08 4.2 0.85 Os08g0484200 9636.m03794 - Zn-finger, RING domain containing protein 7e-1 At2g17420 NTRA (NADPH-DEPENDENT THIOREDOXIN REDUCTASE A) O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
114.0 100.0 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
28.2 99.6 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
25.0 99.5 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
17.7 98.9 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.9 98.7 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.2 98.7 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.7 98.6 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.6 98.6 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.3 98.6 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.6 98.5 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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