CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os11g0621400

Gene name
Homology with Arabidopsis Similar to At4g34290: SWIB complex BAF60b domain-containing protein (HF=1e+0)

Module size 7 genes

NF 0.74

%ile 95.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.61 81.2 0.96 Os11g0621400 AK062468.1 - Hypothetical protein 1e+0 At4g34290 SWIB complex BAF60b domain-containing protein O.I. H.G. S.X.
0.92 99.1 0.96 Os01g0938100 CB680541 - Photosystem II protein PsbW, class I familyprotein 2e+0 At3g44950 glycine-rich protein O.I. H.G. S.X.
0.83 95.8 0.96 Os01g0866400 BU667041 - Fructose-1,6-bisphosphatase (EC 3.1.3.11)(Fragment) 8e-38 At1g43670 fructose-1,6-bisphosphatase, putative / D-fructose-1,6-bisphosphate 1-phosphohydrolase, putative / FBPase, putative O.I. H.G. S.X.
0.67 87.2 0.96 Os08g0566600 AK066210.1 - Conserved hypothetical protein 3e-2 At2g05620 PGR5 (proton gradient regulation 5) O.I. H.G. S.X.
0.67 87.2 0.97 Os02g0285800 AK099035.1 - GTP-binding protein TypA family protein 4e-62 At5g13650 elongation factor family protein O.I. H.G. S.X.
0.61 81.2 0.97 Os02g0593500 AK067498.1 - - 6e-18 At3g26570 PHT2 O.I. H.G. S.X.
0.56 76.3 0.96 Os11g0432400 AK068090.1 - 2-oxoglutarate/malate translocator 2e-13 At5g19760 dicarboxylate/tricarboxylate carrier (DTC) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
10.3 98.1 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
8.7 97.8 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.5 97.7 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.4 97.7 GSM357133 14-day-old seedling, rep 2 GSE14275 Expression data for heat shock in rice seedlings
7.5 97.5 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.5 97.5 GSM195230 5d-seed GSE7951 Genome-wide gene expression profiling of rice stigma
7.4 97.5 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.3 97.5 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.1 97.4 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.9 97.3 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.063 1 GO:0006414 The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage