Co-expression analysis

Gene ID Os11g0599500
Gene name
Homology with ArabidopsisSimilar to At3g58570: DEAD box RNA helicase, putative (HF=4e-40)
Module size 6 genes
NF 0.20
%ile 18.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.90.93Os11g05995009639.m03514-DEAD-box protein 3, Y-chromosomal4e-40At3g58570DEAD box RNA helicase, putativeO.I.H.G.S.X.
0.2727.50.96Os02g0294700AK070497.1-Conserved hypothetical protein7e-6At1g79090unknown proteinO.I.H.G.S.X.
0.2117.90.95Os07g0409700AK072253.1-Mitochondrial import inner membrane translocase,subunit Tim44 family protein3e-7At2g20510ATTIM44-1O.I.H.G.S.X.
0.138.20.93Os02g0150800BX901712-Cyclin-like F-box domain containing protein8e-1At1g32470glycine cleavage system H protein, mitochondrial, putativeO.I.H.G.S.X.
0.138.20.95Os02g0150100AK100093.1-The start codon is not identified.6e-15At5g51280DEAD-box protein abstrakt, putativeO.I.H.G.S.X.
0.105.70.95Os05g0277300AK058300.1-Peptide chain release factor 14e-27At2g47020peptide chain release factor, putativeO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
27.299.6GSM422676ControlGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
10.598.1GSM377081Genomic DNA - 45 day old leaf sample - mutant g7534GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
10.398.1GSM377077Genomic DNA - 45 day old leaf sample - mutant g6489GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
9.898.0GSM377078Genomic DNA - 45 day old leaf sample - mutant g6603GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
9.697.9GSM377075Genomic DNA - 45 day old leaf sample - mutant g650GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
9.497.9GSM377085Genomic DNA - 45 day old leaf sample - mutant f2045GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
9.497.9GSM377070Genomic DNA - 45 day old leaf sample - mutant d1GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
8.697.8GSM377080Genomic DNA - 45 day old leaf sample - mutant g6728GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
7.797.6GSM377084Genomic DNA - 45 day old leaf sample - mutant f1856GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
7.697.5GSM377071Genomic DNA - 45 day old leaf sample - mutant d256GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.1541GO:0006415The process resulting in the release of a polypeptide chain from the ribosome, usually in response to a termination codon (UAA, UAG, or UGA in the universal genetic code).Link to AmiGO
0.0291GO:0007165The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell.Link to AmiGO
0.0201GO:0006886The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell.Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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