CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os11g0552300

Gene name
Homology with Arabidopsis Similar to At5g60680: unknown protein (HF=1e-1)

Module size 6 genes

NF 0.58

%ile 79.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.9 0.99 Os11g0552300 9639.m03151 - - 1e-1 At5g60680 unknown protein O.I. H.G. S.X.
0.67 87.2 0.99 Os06g0479800 9634.m02732 - - 3e+0 At5g37415 sequence-specific DNA binding / transcription factor O.I. H.G. S.X.
0.67 87.2 0.99 Os06g0111901 NM_185397.1 - - 3e-1 At1g71740 unknown protein O.I. H.G. S.X.
0.57 77.0 0.99 Os08g0454500 9636.m03547 - Flavonoid 7-O-methyltransferase (EC 2.1.1.6) 8e+0 At5g05380 PRA1.B3 (PRENYLATED RAB ACCEPTOR 1.B3) O.I. H.G. S.X.
0.43 55.4 0.99 Os08g0340850 9636.m02478 - - 4e-1 At2g37950 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.36 44.0 0.99 Os08g0163032 NM_189115.1 - - 3e+0 At5g42850 - O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.91	98.9	0.99	Os11g0552300	9639.m03151	-	-	1e-1	At5g60680	unknown protein	O.I.	H.G.	S.X.
0.67	87.2	0.99	Os06g0479800	9634.m02732	-	-	3e+0	At5g37415	sequence-specific DNA binding / transcription factor	O.I.	H.G.	S.X.
0.67	87.2	0.99	Os06g0111901	NM_185397.1	-	-	3e-1	At1g71740	unknown protein	O.I.	H.G.	S.X.
0.57	77.0	0.99	Os08g0454500	9636.m03547	-	Flavonoid 7-O-methyltransferase (EC 2.1.1.6)	8e+0	At5g05380	PRA1.B3 (PRENYLATED RAB ACCEPTOR 1.B3)	O.I.	H.G.	S.X.
0.43	55.4	0.99	Os08g0340850	9636.m02478	-	-	4e-1	At2g37950	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.
0.36	44.0	0.99	Os08g0163032	NM_189115.1	-	-	3e+0	At5g42850	-	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
20.8 99.2 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.8 98.8 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.5 98.7 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.1 98.6 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.8 98.6 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.4 98.6 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.4 98.6 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.9 98.5 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.9 98.5 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.0 98.4 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
20.8	99.2	GSM377084	Genomic DNA - 45 day old leaf sample - mutant f1856	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.8	98.8	GSM377081	Genomic DNA - 45 day old leaf sample - mutant g7534	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.5	98.7	GSM377070	Genomic DNA - 45 day old leaf sample - mutant d1	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.1	98.6	GSM377085	Genomic DNA - 45 day old leaf sample - mutant f2045	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.8	98.6	GSM377071	Genomic DNA - 45 day old leaf sample - mutant d256	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.4	98.6	GSM377075	Genomic DNA - 45 day old leaf sample - mutant g650	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.4	98.6	GSM377076	Genomic DNA - 45 day old leaf sample - mutant g6485	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.9	98.5	GSM377077	Genomic DNA - 45 day old leaf sample - mutant g6489	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.9	98.5	GSM377074	Genomic DNA - 45 day old leaf sample - mutant g282	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.0	98.4	GSM377078	Genomic DNA - 45 day old leaf sample - mutant g6603	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

A co-expression module including the maize gene, Zm.6246.2.A1_at, orthologous to the query gene, Os11g0552300

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.89 96.8 Zm.6246.2.A1_at At5g60680 - - 9e-7 At2g22080 unknown protein O.I. H.G. S.X.
0.81 94.3 Zm.6247.1.S1_at At5g60680 alpha zein 19kDa D1 - 5e-1 At5g62360 invertase/pectin methylesterase inhibitor family protein O.I. H.G. S.X.
0.68 86.1 Zm.7035.1.A1_at At5g60680 hypothetical protein LOC100280000 - 3e+0 At3g19130 ATRBP47B (RNA-binding protein 47B) O.I. H.G. S.X.
0.54 69.8 Zm.7120.1.S1_a_at At5g60680 hypothetical protein LOC100193616 - 2e-6 At1g17880 nascent polypeptide-associated complex (NAC) domain-containing protein / BTF3b-like transcription factor, putative O.I. H.G. S.X.
0.51 66.4 Zm.7144.1.A1_at At5g60680 chalcone isomerase 3 - 2e+0 At1g73260 trypsin and protease inhibitor family protein / Kunitz family protein O.I. H.G. S.X.
0.51 66.4 Zm.3526.1.S1_at At5g60680 hypothetical protein LOC100272649 - 3e+0 At2g01890 PAP8 (PURPLE ACID PHOSPHATASE 8) O.I. H.G. S.X.
0.48 61.3 Zm.1323.1.S1_x_at At5g60680 hypothetical protein LOC100275312 - 6e+0 At3g30840 unknown protein O.I. H.G. S.X.
0.47 59.9 Zm.13232.1.S1_at At5g60680 tyrosine/DOPA decarboxylase 2 - 9e-1 At2g04630 NRPB6B O.I. H.G. S.X.
0.46 58.4 Zm.16049.2.A1_x_at At5g60680 - - 3e-4 At5g03850 40S ribosomal protein S28 (RPS28B) O.I. H.G. S.X.
0.46 58.4 Zm.14471.3.S1_at At5g60680 hypothetical protein LOC100191368 - 2e-25 At2g44120 60S ribosomal protein L7 (RPL7C) O.I. H.G. S.X.
0.46 58.4 Zm.16593.4.S1_at At5g60680 hypothetical protein LOC100194160 - 2e-4 At5g51840 unknown protein O.I. H.G. S.X.
0.45 56.4 Zm.7091.1.A1_x_at At5g60680 chlorophyll a/b-binding apoprotein CP24 precursor - 3e-15 At1g15820 LHCB6 (LIGHT HARVESTING COMPLEX PSII SUBUNIT 6) O.I. H.G. S.X.
0.45 56.4 Zm.16513.7.A1_at At5g60680 hypothetical protein LOC100191561 - 0 At5g09810 ACT7 (ACTIN 7) O.I. H.G. S.X.
0.45 56.4 Zm.7144.1.S1_at At5g60680 - - 2e+0 At1g73260 trypsin and protease inhibitor family protein / Kunitz family protein O.I. H.G. S.X.
0.44 55.7 Zm.3219.1.S1_a_at At5g60680 beta-expansin 9 protein - 9e+0 At4g32950 protein phosphatase 2C, putative / PP2C, putative O.I. H.G. S.X.
0.44 55.7 Zm.6113.1.A1_at At5g60680 - - 7e-2 At4g22745 MBD1 O.I. H.G. S.X.
0.43 52.8 Zm.3217.1.A1_at At5g60680 hypothetical protein LOC100193166 - 4e-12 At1g63900 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.42 51.3 Zm.7121.1.A1_at At5g60680 hypothetical protein LOC100191328 - 2e-5 At3g12120 FAD2 (FATTY ACID DESATURASE 2) O.I. H.G. S.X.
0.42 51.3 Zm.6482.1.A1_at At5g60680 hypothetical protein LOC100216804 - 5e-1 At2g46050 pentatricopeptide (PPR) repeat-containing protein O.I. H.G. S.X.
0.42 51.3 Zm.16259.1.A1_x_at At5g60680 hypothetical protein LOC100273269 - 1e-6 At4g27230 HTA2 (histone H2A) O.I. H.G. S.X.
0.41 49.7 Zm.16534.1.S1_at At5g60680 - - 8e+0 At5g04350 self-incompatibility protein-related O.I. H.G. S.X.
0.41 49.7 Zm.14473.1.A1_a_at At5g60680 - - 1e-10 At2g23350 PAB4 (POLY(A) BINDING PROTEIN 4) O.I. H.G. S.X.
0.40 48.5 Zm.6103.2.S1_at At5g60680 UBA and UBX domain-containing protein - 2e-1 At4g04210 PUX4 O.I. H.G. S.X.
0.40 48.5 Zm.14507.1.A1_a_at At5g60680 glycosyl hydrolases family 16 protein - 1e-2 At1g11545 xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative O.I. H.G. S.X.
0.40 48.5 Zm.16967.1.A1_at At5g60680 - - 2e+0 At1g12090 ELP (EXTENSIN-LIKE PROTEIN) O.I. H.G. S.X.
0.39 45.6 Zm.7328.1.S1_at At5g60680 kinesin-like protein1 - 1e-13 At4g24170 kinesin motor family protein O.I. H.G. S.X.
0.38 44.2 Zm.3743.2.S1_at At5g60680 - - 2e+0 At5g04045 Expressed protein O.I. H.G. S.X.
0.38 44.2 Zm.7090.1.S1_at At5g60680 hypothetical protein LOC100191899 - 6e+0 At5g01740 - O.I. H.G. S.X.
0.36 41.3 Zm.7034.2.A1_a_at At5g60680 hypothetical protein LOC100279884 - 1e+0 At4g18080 unknown protein O.I. H.G. S.X.
0.35 38.9 Zm.5190.1.A1_at At5g60680 Pyruvate kinase-like - 9e-44 At5g52920 PKP-BETA1 (PLASTIDIC PYRUVATE KINASE BETA SUBUNIT 1) O.I. H.G. S.X.
0.30 29.8 Zm.6061.1.S1_at At5g60680 hypothetical protein LOC100192928 - 2e-46 At5g20570 RBX1 (RING-BOX 1) O.I. H.G. S.X.
0.29 28.1 Zm.606.1.A2_s_at At5g60680 plasma membrane integral protein ZmPIP2-2 /// plasma membrane intrinsic protein2 - 1e-37 At2g37180 RD28 (RESPONSIVE TO DESICCATION 28) O.I. H.G. S.X.
0.28 28.1 Zm.5823.1.A1_at At5g60680 hypothetical protein LOC100194104 - 2e-10 At1g14310 haloacid dehalogenase-like hydrolase family protein O.I. H.G. S.X.
0.26 22.7 Zm.16532.4.S1_x_at At5g60680 60S ribosomal protein L18a - 7e-68 At2g34480 60S ribosomal protein L18A (RPL18aB) O.I. H.G. S.X.

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.89	96.8	Zm.6246.2.A1_at	At5g60680	-	-	9e-7	At2g22080	unknown protein	O.I.	H.G.	S.X.
0.81	94.3	Zm.6247.1.S1_at	At5g60680	alpha zein 19kDa D1	-	5e-1	At5g62360	invertase/pectin methylesterase inhibitor family protein	O.I.	H.G.	S.X.
0.68	86.1	Zm.7035.1.A1_at	At5g60680	hypothetical protein LOC100280000	-	3e+0	At3g19130	ATRBP47B (RNA-binding protein 47B)	O.I.	H.G.	S.X.
0.54	69.8	Zm.7120.1.S1_a_at	At5g60680	hypothetical protein LOC100193616	-	2e-6	At1g17880	nascent polypeptide-associated complex (NAC) domain-containing protein / BTF3b-like transcription factor, putative	O.I.	H.G.	S.X.
0.51	66.4	Zm.7144.1.A1_at	At5g60680	chalcone isomerase 3	-	2e+0	At1g73260	trypsin and protease inhibitor family protein / Kunitz family protein	O.I.	H.G.	S.X.
0.51	66.4	Zm.3526.1.S1_at	At5g60680	hypothetical protein LOC100272649	-	3e+0	At2g01890	PAP8 (PURPLE ACID PHOSPHATASE 8)	O.I.	H.G.	S.X.
0.48	61.3	Zm.1323.1.S1_x_at	At5g60680	hypothetical protein LOC100275312	-	6e+0	At3g30840	unknown protein	O.I.	H.G.	S.X.
0.47	59.9	Zm.13232.1.S1_at	At5g60680	tyrosine/DOPA decarboxylase 2	-	9e-1	At2g04630	NRPB6B	O.I.	H.G.	S.X.
0.46	58.4	Zm.16049.2.A1_x_at	At5g60680	-	-	3e-4	At5g03850	40S ribosomal protein S28 (RPS28B)	O.I.	H.G.	S.X.
0.46	58.4	Zm.14471.3.S1_at	At5g60680	hypothetical protein LOC100191368	-	2e-25	At2g44120	60S ribosomal protein L7 (RPL7C)	O.I.	H.G.	S.X.
0.46	58.4	Zm.16593.4.S1_at	At5g60680	hypothetical protein LOC100194160	-	2e-4	At5g51840	unknown protein	O.I.	H.G.	S.X.
0.45	56.4	Zm.7091.1.A1_x_at	At5g60680	chlorophyll a/b-binding apoprotein CP24 precursor	-	3e-15	At1g15820	LHCB6 (LIGHT HARVESTING COMPLEX PSII SUBUNIT 6)	O.I.	H.G.	S.X.
0.45	56.4	Zm.16513.7.A1_at	At5g60680	hypothetical protein LOC100191561	-	0	At5g09810	ACT7 (ACTIN 7)	O.I.	H.G.	S.X.
0.45	56.4	Zm.7144.1.S1_at	At5g60680	-	-	2e+0	At1g73260	trypsin and protease inhibitor family protein / Kunitz family protein	O.I.	H.G.	S.X.
0.44	55.7	Zm.3219.1.S1_a_at	At5g60680	beta-expansin 9 protein	-	9e+0	At4g32950	protein phosphatase 2C, putative / PP2C, putative	O.I.	H.G.	S.X.
0.44	55.7	Zm.6113.1.A1_at	At5g60680	-	-	7e-2	At4g22745	MBD1	O.I.	H.G.	S.X.
0.43	52.8	Zm.3217.1.A1_at	At5g60680	hypothetical protein LOC100193166	-	4e-12	At1g63900	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.
0.42	51.3	Zm.7121.1.A1_at	At5g60680	hypothetical protein LOC100191328	-	2e-5	At3g12120	FAD2 (FATTY ACID DESATURASE 2)	O.I.	H.G.	S.X.
0.42	51.3	Zm.6482.1.A1_at	At5g60680	hypothetical protein LOC100216804	-	5e-1	At2g46050	pentatricopeptide (PPR) repeat-containing protein	O.I.	H.G.	S.X.
0.42	51.3	Zm.16259.1.A1_x_at	At5g60680	hypothetical protein LOC100273269	-	1e-6	At4g27230	HTA2 (histone H2A)	O.I.	H.G.	S.X.
0.41	49.7	Zm.16534.1.S1_at	At5g60680	-	-	8e+0	At5g04350	self-incompatibility protein-related	O.I.	H.G.	S.X.
0.41	49.7	Zm.14473.1.A1_a_at	At5g60680	-	-	1e-10	At2g23350	PAB4 (POLY(A) BINDING PROTEIN 4)	O.I.	H.G.	S.X.
0.40	48.5	Zm.6103.2.S1_at	At5g60680	UBA and UBX domain-containing protein	-	2e-1	At4g04210	PUX4	O.I.	H.G.	S.X.
0.40	48.5	Zm.14507.1.A1_a_at	At5g60680	glycosyl hydrolases family 16 protein	-	1e-2	At1g11545	xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative	O.I.	H.G.	S.X.
0.40	48.5	Zm.16967.1.A1_at	At5g60680	-	-	2e+0	At1g12090	ELP (EXTENSIN-LIKE PROTEIN)	O.I.	H.G.	S.X.
0.39	45.6	Zm.7328.1.S1_at	At5g60680	kinesin-like protein1	-	1e-13	At4g24170	kinesin motor family protein	O.I.	H.G.	S.X.
0.38	44.2	Zm.3743.2.S1_at	At5g60680	-	-	2e+0	At5g04045	Expressed protein	O.I.	H.G.	S.X.
0.38	44.2	Zm.7090.1.S1_at	At5g60680	hypothetical protein LOC100191899	-	6e+0	At5g01740	-	O.I.	H.G.	S.X.
0.36	41.3	Zm.7034.2.A1_a_at	At5g60680	hypothetical protein LOC100279884	-	1e+0	At4g18080	unknown protein	O.I.	H.G.	S.X.
0.35	38.9	Zm.5190.1.A1_at	At5g60680	Pyruvate kinase-like	-	9e-44	At5g52920	PKP-BETA1 (PLASTIDIC PYRUVATE KINASE BETA SUBUNIT 1)	O.I.	H.G.	S.X.
0.30	29.8	Zm.6061.1.S1_at	At5g60680	hypothetical protein LOC100192928	-	2e-46	At5g20570	RBX1 (RING-BOX 1)	O.I.	H.G.	S.X.
0.29	28.1	Zm.606.1.A2_s_at	At5g60680	plasma membrane integral protein ZmPIP2-2 /// plasma membrane intrinsic protein2	-	1e-37	At2g37180	RD28 (RESPONSIVE TO DESICCATION 28)	O.I.	H.G.	S.X.
0.28	28.1	Zm.5823.1.A1_at	At5g60680	hypothetical protein LOC100194104	-	2e-10	At1g14310	haloacid dehalogenase-like hydrolase family protein	O.I.	H.G.	S.X.
0.26	22.7	Zm.16532.4.S1_x_at	At5g60680	60S ribosomal protein L18a	-	7e-68	At2g34480	60S ribosomal protein L18A (RPL18aB)	O.I.	H.G.	S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera

Back to the CoP portal site

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Gene ID	Os11g0552300
Gene name
Homology with Arabidopsis	Similar to At5g60680: unknown protein (HF=1e-1)
Module size	6 genes
NF	0.58
%ile	79.5

Co-expression analysis

Gene ID Os11g0552300 Gene name Homology with ArabidopsisSimilar to At5g60680: unknown protein (HF=1e-1) Module size 6 genes NF 0.58 %ile 79.5

Co-expressed genes

Click More genes

Specific experiments for the module

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgarePopulus_trichocarpaTriticum_aestivumVitis_vinifera

Gene ID Os11g0552300

Gene name
Homology with Arabidopsis Similar to At5g60680: unknown protein (HF=1e-1)

Module size 6 genes

NF 0.58

%ile 79.5

SF Genes GO ID Process Name Link to AmiGO

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera