Co-expression analysis

Gene ID Os11g0552300
Gene name
Homology with ArabidopsisSimilar to At5g60680: unknown protein (HF=1e-1)
Module size 6 genes
NF 0.58
%ile 79.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.90.99Os11g05523009639.m03151--1e-1At5g60680unknown proteinO.I.H.G.S.X.
0.6787.20.99Os06g04798009634.m02732--3e+0At5g37415sequence-specific DNA binding / transcription factorO.I.H.G.S.X.
0.6787.20.99Os06g0111901NM_185397.1--3e-1At1g71740unknown proteinO.I.H.G.S.X.
0.5777.00.99Os08g04545009636.m03547-Flavonoid 7-O-methyltransferase (EC 2.1.1.6)8e+0At5g05380PRA1.B3 (PRENYLATED RAB ACCEPTOR 1.B3)O.I.H.G.S.X.
0.4355.40.99Os08g03408509636.m02478--4e-1At2g37950zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.3644.00.99Os08g0163032NM_189115.1--3e+0At5g42850-O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
20.899.2GSM377084Genomic DNA - 45 day old leaf sample - mutant f1856GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
16.898.8GSM377081Genomic DNA - 45 day old leaf sample - mutant g7534GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
15.598.7GSM377070Genomic DNA - 45 day old leaf sample - mutant d1GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
15.198.6GSM377085Genomic DNA - 45 day old leaf sample - mutant f2045GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
14.898.6GSM377071Genomic DNA - 45 day old leaf sample - mutant d256GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
14.498.6GSM377075Genomic DNA - 45 day old leaf sample - mutant g650GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
14.498.6GSM377076Genomic DNA - 45 day old leaf sample - mutant g6485GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
13.998.5GSM377077Genomic DNA - 45 day old leaf sample - mutant g6489GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
13.998.5GSM377074Genomic DNA - 45 day old leaf sample - mutant g282GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
13.098.4GSM377078Genomic DNA - 45 day old leaf sample - mutant g6603GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.40283.1.S1_at, orthologous to the query gene, Os11g0552300

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.7794.9PtpAffx.40283.1.S1_atAt5g60680hypothetical protein-2e-1At5g60680unknown proteinO.I.H.G.S.X.
0.8397.0PtpAffx.2715.1.S1_atAt5g60680hypothetical protein-8e-1At5g63634unknown proteinO.I.H.G.S.X.
0.7393.6PtpAffx.24025.1.S1_atAt5g60680hypothetical protein-8e+0At5g53450ORG1 (OBP3-responsive gene 1)O.I.H.G.S.X.
0.6388.1PtpAffx.53105.1.S1_atAt5g60680hypothetical protein-6e-1At1g48300unknown proteinO.I.H.G.S.X.
0.6086.0PtpAffx.3298.1.S1_atAt5g60680--3e+0Atmg00480-O.I.H.G.S.X.
0.4471.9Ptp.6152.1.S1_atAt5g60680hypothetical protein-5e+0At4g09580-O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Triticum_aestivum
Vitis_vinifera
Zea_mays



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