Co-expression analysis

Gene ID Os11g0552300
Gene name
Homology with ArabidopsisSimilar to At5g60680: unknown protein (HF=1e-1)
Module size 6 genes
NF 0.58
%ile 79.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.90.99Os11g05523009639.m03151--1e-1At5g60680unknown proteinO.I.H.G.S.X.
0.6787.20.99Os06g04798009634.m02732--3e+0At5g37415sequence-specific DNA binding / transcription factorO.I.H.G.S.X.
0.6787.20.99Os06g0111901NM_185397.1--3e-1At1g71740unknown proteinO.I.H.G.S.X.
0.5777.00.99Os08g04545009636.m03547-Flavonoid 7-O-methyltransferase (EC 2.1.1.6)8e+0At5g05380PRA1.B3 (PRENYLATED RAB ACCEPTOR 1.B3)O.I.H.G.S.X.
0.4355.40.99Os08g03408509636.m02478--4e-1At2g37950zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.3644.00.99Os08g0163032NM_189115.1--3e+0At5g42850-O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
20.899.2GSM377084Genomic DNA - 45 day old leaf sample - mutant f1856GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
16.898.8GSM377081Genomic DNA - 45 day old leaf sample - mutant g7534GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
15.598.7GSM377070Genomic DNA - 45 day old leaf sample - mutant d1GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
15.198.6GSM377085Genomic DNA - 45 day old leaf sample - mutant f2045GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
14.898.6GSM377071Genomic DNA - 45 day old leaf sample - mutant d256GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
14.498.6GSM377075Genomic DNA - 45 day old leaf sample - mutant g650GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
14.498.6GSM377076Genomic DNA - 45 day old leaf sample - mutant g6485GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
13.998.5GSM377077Genomic DNA - 45 day old leaf sample - mutant g6489GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
13.998.5GSM377074Genomic DNA - 45 day old leaf sample - mutant g282GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
13.098.4GSM377078Genomic DNA - 45 day old leaf sample - mutant g6603GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At5g60680, orthologous to the query gene, Os11g0552300

VF%ileGene IDRepr. IDGene NameFunc.O.I.H.G.S.X.Other DB
0.114.1At5g60680836189unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PMO.I.H.G.S.X.
0.4050.8At2g25900817131ATCTHputative Cys3His zinc finger protein (ATCTH) mRNA, completeO.I.H.G.S.X.
0.4050.8At5g19120832032aspartic-type endopeptidaseF:aspartic-type endopeptidase activity;P:proteolysis;C:endomembrane system;PFO.I.H.G.S.X.
0.3338.1At3g15450820784unknown proteinF:molecular_function unknown;P:unknown;C:unknown;PBOMFO.I.H.G.S.X.
0.082.3At1g49500841374unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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