CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os11g0544000

Gene name
Homology with Arabidopsis Similar to At1g19990: unknown protein (HF=7e-2)

Module size 10 genes

NF 0.58

%ile 78.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 87.2 0.91 Os11g0544000 AK066017.1 - - 7e-2 At1g19990 unknown protein O.I. H.G. S.X.
0.95 99.6 0.93 Os07g0510100 AK066776.1 - Methionine aminopeptidase-like protein 3e-19 At1g13270 MAP1C (METHIONINE AMINOPEPTIDASE 1B) O.I. H.G. S.X.
0.78 93.4 0.91 Os01g0829000 AK065327.1 - Conserved hypothetical protein 7e-1 At5g43410 ethylene-responsive factor, putative O.I. H.G. S.X.
0.60 79.7 0.95 Os01g0618400 NM_192814.1 - RNA helicase (Fragment) 2e-20 At5g63630 DEAD box RNA helicase, putative O.I. H.G. S.X.
0.53 71.3 0.95 Os08g0345400 AK065348.1 - Conserved hypothetical protein 1e-2 At2g04360 unknown protein O.I. H.G. S.X.
0.50 68.0 0.94 Os01g0306800 AK099426.1 - Conserved hypothetical protein 9e-1 At5g42370 unknown protein O.I. H.G. S.X.
0.50 68.0 0.94 Os03g0736400 AK105812.1 - Conserved hypothetical protein 95 family protein 1e-24 At3g28460 unknown protein O.I. H.G. S.X.
0.38 46.9 0.93 Os02g0751600 AK072946.1 - Peptidylprolyl isomerase, FKBP-type domaincontaining protein 4e-2 At5g03030 DNAJ heat shock N-terminal domain-containing protein O.I. H.G. S.X.
0.38 46.9 0.94 Os01g0558800 AK068120.1 - Conserved hypothetical protein 8e-1 At5g19300 - O.I. H.G. S.X.
0.36 44.0 0.93 Os10g0512500 AK067203.1 - Protein of unknown function UPF0044 family protein 1e+0 At1g18210 calcium-binding protein, putative O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
31.7 99.7 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
25.2 99.5 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
11.6 98.2 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
10.5 98.1 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.9 98.0 GSM377083 Genomic DNA - 45 day old leaf sample - mutant g6989 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.8 98.0 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.4 97.9 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.3 97.9 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.7 97.8 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.8 97.6 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.023 1 GO:0006457 The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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