CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os11g0520201

Gene name
Homology with Arabidopsis Similar to At2g35960: NHL12 (HF=8e-2)

Module size 19 genes

NF 0.46

%ile 58.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.80 94.6 0.98 Os11g0520201 9639.m02910 - - 8e-2 At2g35960 NHL12 O.I. H.G. S.X.
0.72 89.8 0.98 Os02g0328200 AK064617.1 - Conserved hypothetical protein 3e-5 At4g36170 unknown protein O.I. H.G. S.X.
0.60 79.7 0.98 Os01g0820700 9629.m05948 - - 7e+0 At5g64810 WRKY51 O.I. H.G. S.X.
0.55 73.7 0.98 Os07g0443301 9635.m02512 - - 3e+0 At3g21220 ATMKK5 (ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5) O.I. H.G. S.X.
0.55 73.7 0.98 Os08g0417900 9636.m03224 - - 6e+0 At1g52580 ATRBL5 (ARABIDOPSIS RHOMBOID-LIKE PROTEIN 5) O.I. H.G. S.X.
0.53 71.3 0.98 Os12g0516500 NM_194205.1 - - 8e-1 At2g27720 60S acidic ribosomal protein P2 (RPP2A) O.I. H.G. S.X.
0.50 68.0 0.98 Os06g0564400 9634.m03503 - Cysteine synthase, chloroplast precursor (EC2.5.1.47) (O-acetylserine sulfhydrylase) (O-acetylserine(Thiol)-lyase) (CSase B) (CS-B) (OAS-TL B) 7e-1 At3g59760 OASC (O-ACETYLSERINE (THIOL) LYASE ISOFORM C) O.I. H.G. S.X.
0.48 63.7 0.99 Os04g0516800 AK105554.1 - Conserved hypothetical protein 2e-1 At5g02570 histone H2B, putative O.I. H.G. S.X.
0.48 63.7 0.98 Os08g0146400 9636.m00435 - - 2e+0 At2g27580 zinc finger (AN1-like) family protein O.I. H.G. S.X.
0.45 58.8 0.99 Os03g0611800 9637.m02957 - - 4e+0 At3g46070 zinc finger (C2H2 type) family protein O.I. H.G. S.X.
0.43 55.4 0.99 Os06g0165600 AY345235.1 - CRT/DRE binding factor (Transcription factorRCBF4) 2e-3 At5g65320 basic helix-loop-helix (bHLH) family protein O.I. H.G. S.X.
0.39 48.3 0.98 Os03g0675000 AK063092.1 - Conserved hypothetical protein 9e-1 At4g24240 WRKY7 O.I. H.G. S.X.
0.38 46.9 0.99 Os01g0845400 9629.m06194 - - 2e+0 At2g17442 unknown protein O.I. H.G. S.X.
0.37 45.0 0.98 Os06g0269500 9634.m01589 - - 5e+0 At5g41350 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.31 34.5 0.99 Os12g0413400 AK062663.1 - Hypothetical protein 2e+0 At3g01530 AtMYB57 (myb domain protein 57) O.I. H.G. S.X.
0.31 34.5 0.99 Os01g0268000 AK107975.1 - Hypothetical protein 2e+0 At3g21270 ADOF2 O.I. H.G. S.X.
0.30 32.7 0.99 Os08g0250400 9636.m01523 - - 3e-1 At2g32130 - O.I. H.G. S.X.
0.26 25.6 0.98 Os08g0515400 NM_188993.1 - - 5e-4 At1g76990 ACR3 O.I. H.G. S.X.
0.25 24.1 0.99 Os08g0486000 AK108407.1 - Conserved hypothetical protein 1e+0 At4g05070 unknown protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
35.3 99.8 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
12.1 98.3 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
10.6 98.1 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.3 98.1 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.2 98.0 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.2 98.0 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.2 98.0 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.9 98.0 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.7 98.0 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.2 97.9 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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