CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os11g0503900

Gene name
Homology with Arabidopsis Similar to At1g74100: SOT16 (SULFOTRANSFERASE 16) (HF=4e-2)

Module size 9 genes

NF 0.38

%ile 44.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.50 68.0 0.83 Os11g0503900 AK061183.1 - Sulfotransferase family protein 4e-2 At1g74100 SOT16 (SULFOTRANSFERASE 16) O.I. H.G. S.X.
0.53 71.3 0.92 Os05g0563000 AK100983.1 - No apical meristem (NAM) protein domain containingprotein 5e-5 At1g28470 ANAC010 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 10) O.I. H.G. S.X.
0.43 55.4 0.88 Os03g0416200 AK069631.1 - BRITTLE CULM1 2e-11 At5g60920 COB (COBRA) O.I. H.G. S.X.
0.36 44.0 0.86 Os06g0610800 AK062719.1 - Peptidase A1, pepsin family protein 1e+0 At3g24010 ING1 (INHIBITOR OF GROWTH 1) O.I. H.G. S.X.
0.33 38.8 0.89 Os09g0500900 9637.m02845 - Protein of unknown function DUF568 domaincontaining protein 4e-2 At2g05510 glycine-rich protein O.I. H.G. S.X.
0.33 38.8 0.92 Os08g0531100 AK067790.1 - MAP65/ASE1 family protein 2e-2 At1g27920 MAP65-8 (MICROTUBULE-ASSOCIATED PROTEIN 65-8) O.I. H.G. S.X.
0.25 24.1 0.87 Os03g0184300 AK120569.1 - Glycosyl transferase, family 8 protein 3e-1 At4g33330 transferase, transferring glycosyl groups O.I. H.G. S.X.
0.25 24.1 0.91 Os06g0537600 AK063014.1 - Zn-finger, RING domain containing protein 9e-2 At5g11930 glutaredoxin family protein O.I. H.G. S.X.
0.22 19.4 0.88 Os07g0572400 AK067317.1 - Conserved hypothetical protein 2e+0 At4g11430 hydroxyproline-rich glycoprotein family protein O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
33.2 99.8 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
27.2 99.6 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
14.7 98.6 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
11.1 98.2 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.0 98.2 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.6 98.1 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.5 98.1 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.1 98.0 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.1 98.0 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.5 97.9 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.077 1 GO:0016051 The chemical reactions and pathways resulting in the formation of carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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