CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os11g0492700

Gene name
Homology with Arabidopsis Similar to At4g37140: MEE69 (MATERNAL EFFECT EMBRYO ARREST 69) (HF=1e-3)

Module size 7 genes

NF 0.44

%ile 55.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.55 73.7 0.99 Os11g0492700 9639.m02716 - Esterase/lipase/thioesterase domain containingprotein 1e-3 At4g37140 MEE69 (MATERNAL EFFECT EMBRYO ARREST 69) O.I. H.G. S.X.
0.50 68.0 0.99 Os04g0633200 9632.m05252 - S-locus glycoprotein family protein 9e-8 At4g03230 ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase/ sugar binding O.I. H.G. S.X.
0.47 62.3 0.99 Os04g0193300 AK106803.1 - Cyclin-like F-box domain containing protein 1e-3 At5g35170 adenylate kinase family protein O.I. H.G. S.X.
0.38 46.9 0.99 Os04g0531200 9632.m04312 - - 6e-1 At5g47700 60S acidic ribosomal protein P1 (RPP1C) O.I. H.G. S.X.
0.38 46.9 0.99 Os08g0299100 9640.m02491 - - 8e-2 At2g19330 leucine-rich repeat family protein O.I. H.G. S.X.
0.38 46.9 0.99 Os01g0970200 NM_189446.1 - - 2e-1 At2g23310 ATRER1C1 O.I. H.G. S.X.
0.38 46.9 0.99 Os09g0371800 9637.m01757 - - 2e-1 At1g58100 TCP family transcription factor, putative O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
36.5 99.8 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
21.4 99.2 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
16.2 98.8 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
11.4 98.2 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.1 98.2 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.7 98.1 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.6 98.1 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.1 98.0 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.8 98.0 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.8 98.0 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.222 1 GO:0016071 The chemical reactions and pathways involving mRNA, messenger RNA, which is responsible for carrying the coded genetic 'message', transcribed from DNA, to sites of protein assembly at the ribosomes.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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