CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os11g0482800

Gene name
Homology with Arabidopsis Similar to At2g24762: AtGDU4 (Arabidopsis thaliana GLUTAMINE DUMPER 4) (HF=2e+1)

Module size 13 genes

NF 0.30

%ile 32.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.73 91.1 0.98 Os11g0482800 9639.m02646 - - 2e+1 At2g24762 AtGDU4 (Arabidopsis thaliana GLUTAMINE DUMPER 4) O.I. H.G. S.X.
0.55 73.7 0.98 Os03g0677700 9631.m04609 - - 9e+0 At5g61660 glycine-rich protein O.I. H.G. S.X.
0.42 53.9 0.99 Os11g0569100 9639.m03253 - - 3e-1 At1g10140 - O.I. H.G. S.X.
0.33 38.8 0.99 Os10g0379000 9638.m01982 - - 6e-1 At5g60590 yrdC protein-related O.I. H.G. S.X.
0.30 32.7 0.98 Os05g0113200 AK110680.1 - Hypothetical protein 7e+0 At2g20784 unknown protein O.I. H.G. S.X.
0.29 31.1 0.98 Os05g0236700 9633.m01288 - - 4e-1 At5g62575 unknown protein O.I. H.G. S.X.
0.29 31.1 0.99 Os07g0408600 NM_187781.1 - - 3e+0 At5g11990 proline-rich family protein O.I. H.G. S.X.
0.27 27.5 0.98 Os07g0433800 9635.m02426 - - 5e+0 At5g62720 integral membrane HPP family protein O.I. H.G. S.X.
0.25 24.1 0.99 Os09g0382800 9637.m01851 - - 3e-4 At4g19710 bifunctional aspartate kinase/homoserine dehydrogenase, putative / AK-HSDH, putative O.I. H.G. S.X.
0.23 21.2 0.98 Os07g0468300 9635.m02774 - - 5e-1 At4g13700 PAP23 (PURPLE ACID PHOSPHATASE 23) O.I. H.G. S.X.
0.23 21.2 0.98 Os06g0340900 9634.m02296 - - 6e-1 At4g11175 translation initiation factor IF-1, chloroplast, putative O.I. H.G. S.X.
0.20 16.5 0.99 Os01g0672166 NM_191968.1 - - 5e-2 At1g50270 pentatricopeptide (PPR) repeat-containing protein O.I. H.G. S.X.
0.20 16.5 0.98 Os08g0496400 AK110964.1 - Conserved hypothetical protein 3e+0 At4g20260 DREPP plasma membrane polypeptide family protein O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
31.0 99.7 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
27.4 99.6 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
16.4 98.8 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.8 98.7 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.1 98.6 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.0 98.5 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.6 98.5 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.5 98.5 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.5 98.3 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.6 98.2 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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