CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os11g0471200

Gene name
Homology with Arabidopsis Similar to At1g15430: - (HF=9e-2)

Module size 6 genes

NF 0.17

%ile 14.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 87.2 0.65 Os11g0471200 AK066957.1 - Conserved hypothetical protein 9e-2 At1g15430 - O.I. H.G. S.X.
0.50 68.0 0.80 Os01g0750100 AK067329.1 - WRKY transcription factor 31 1e-11 At3g58710 WRKY69 O.I. H.G. S.X.
0.40 51.1 0.71 Os10g0186800 9638.m00950 - Nucleic acid-binding OB-fold domain containingprotein 8e+0 At5g55940 emb2731 (embryo defective 2731) O.I. H.G. S.X.
0.23 21.2 0.83 Os10g0498300 AK060338.1 - Epoxide hydrolase 2e+0 At5g59870 HTA6 O.I. H.G. S.X.
0.10 5.7 0.83 Os07g0222900 CB645570 - KDPG and KHG aldolase family protein 3e+0 At3g52720 ACA1 (ALPHA CARBONIC ANHYDRASE 1) O.I. H.G. S.X.
0.04 2.0 0.83 Os01g0343500 AK071988.1 - TPR repeat containing protein 9e-10 At3g05625 binding O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.67	87.2	0.65	Os11g0471200	AK066957.1	-	Conserved hypothetical protein	9e-2	At1g15430	-	O.I.	H.G.	S.X.
0.50	68.0	0.80	Os01g0750100	AK067329.1	-	WRKY transcription factor 31	1e-11	At3g58710	WRKY69	O.I.	H.G.	S.X.
0.40	51.1	0.71	Os10g0186800	9638.m00950	-	Nucleic acid-binding OB-fold domain containingprotein	8e+0	At5g55940	emb2731 (embryo defective 2731)	O.I.	H.G.	S.X.
0.23	21.2	0.83	Os10g0498300	AK060338.1	-	Epoxide hydrolase	2e+0	At5g59870	HTA6	O.I.	H.G.	S.X.
0.10	5.7	0.83	Os07g0222900	CB645570	-	KDPG and KHG aldolase family protein	3e+0	At3g52720	ACA1 (ALPHA CARBONIC ANHYDRASE 1)	O.I.	H.G.	S.X.
0.04	2.0	0.83	Os01g0343500	AK071988.1	-	TPR repeat containing protein	9e-10	At3g05625	binding	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
38.5 99.8 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
15.7 98.7 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
11.4 98.2 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.8 98.1 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.6 98.1 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.2 98.0 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.8 98.0 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.6 97.9 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.5 97.9 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.4 97.9 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
38.5	99.8	GSM422674	Musa_DNA_RICE	GSE16865	Heterologous microarrays for the study of drought stress in Musa
15.7	98.7	GSM422672	Drought	GSE16865	Heterologous microarrays for the study of drought stress in Musa
11.4	98.2	GSM377074	Genomic DNA - 45 day old leaf sample - mutant g282	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.8	98.1	GSM377077	Genomic DNA - 45 day old leaf sample - mutant g6489	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.6	98.1	GSM377078	Genomic DNA - 45 day old leaf sample - mutant g6603	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.2	98.0	GSM377081	Genomic DNA - 45 day old leaf sample - mutant g7534	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.8	98.0	GSM377075	Genomic DNA - 45 day old leaf sample - mutant g650	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.6	97.9	GSM377086	Genomic DNA - 45 day old leaf sample - IR64 wtcheck	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.5	97.9	GSM377070	Genomic DNA - 45 day old leaf sample - mutant d1	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.4	97.9	GSM377071	Genomic DNA - 45 day old leaf sample - mutant d256	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

A co-expression module including the maize gene, Zm.1216.1.A1_at, orthologous to the query gene, Os11g0471200

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.89 96.8 Zm.1216.1.A1_at At1g15430 IDP408 protein - 4e-1 At2g20740 - O.I. H.G. S.X.
0.69 86.5 Zm.423.1.S1_at At1g15430 starch synthase isoform zSTSII-2 - 3e-7 At3g01180 AtSS2 (starch synthase 2) O.I. H.G. S.X.
0.48 61.3 Zm.5086.2.S1_at At1g15430 hypothetical protein LOC100277068 - 2e+0 At3g13686 unknown protein O.I. H.G. S.X.
0.47 59.9 Zm.3892.1.A1_x_at At1g15430 Elongation factor 1 alpha - 1e-175 At1g07920 elongation factor 1-alpha / EF-1-alpha O.I. H.G. S.X.
0.45 56.4 Zm.16419.1.S1_at At1g15430 hypothetical protein LOC100276284 - 2e+1 At5g08190 NF-YB12 (NUCLEAR FACTOR Y, SUBUNIT B12) O.I. H.G. S.X.
0.42 51.3 Zm.11837.1.A1_at At1g15430 hypothetical protein LOC100275424 - 1e+0 At4g16380 metal ion binding O.I. H.G. S.X.
0.41 49.7 Zm.10422.1.S1_at At1g15430 hypothetical protein LOC100275624 - 4e+0 At2g14846 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein O.I. H.G. S.X.
0.40 48.5 Zm.13627.1.A1_at At1g15430 hypothetical protein LOC100275707 - 3e-1 At2g22200 AP2 domain-containing transcription factor O.I. H.G. S.X.
0.37 42.3 Zm.17747.1.S1_at At1g15430 hypothetical protein LOC100193554 - 1e+0 At2g29390 SMO2-2 (STEROL 4-ALPHA-METHYL-OXIDASE 2-2) O.I. H.G. S.X.
0.35 38.9 Zm.3786.1.S1_at At1g15430 hypothetical protein LOC100273838 - 3e-3 At5g54680 ILR3 (iaa-leucine resistant3) O.I. H.G. S.X.
0.33 36.0 Zm.2652.1.A1_at At1g15430 - - 1e+1 At5g18020 auxin-responsive protein, putative O.I. H.G. S.X.
0.33 36.0 Zm.13198.2.A1_at At1g15430 - - 4e+0 At3g43432 unknown protein O.I. H.G. S.X.
0.32 33.4 Zm.3436.1.A1_at At1g15430 hypothetical protein LOC100217002 - 1e-20 At3g54190 - O.I. H.G. S.X.
0.32 33.4 Zm.4285.3.A1_at At1g15430 Dual-specificity protein-like phosphatase 2 - 2e+0 At3g53990 universal stress protein (USP) family protein O.I. H.G. S.X.
0.27 24.6 Zm.9097.1.A1_at At1g15430 - - 1e+0 At2g17640 ATSERAT3 O.I. H.G. S.X.
0.27 24.6 Zm.2563.1.A1_at At1g15430 - - 7e-3 At4g22440 unknown protein O.I. H.G. S.X.
0.26 22.7 Zm.3866.1.S1_at At1g15430 D-amino acid oxidase - 3e+0 At1g51760 IAR3 (IAA-ALANINE RESISTANT 3) O.I. H.G. S.X.
0.25 21.3 Zm.9389.2.A1_x_at At1g15430 catalytic/ protein phosphatase type 2C - 1e+0 Atmg00980 - O.I. H.G. S.X.
0.25 21.3 Zm.4160.1.A1_at At1g15430 indole-3-acetate beta-glucosyltransferase - 1e-2 At4g15550 IAGLU (INDOLE-3-ACETATE BETA-D-GLUCOSYLTRANSFERASE) O.I. H.G. S.X.
0.23 18.6 ZmAffx.811.1.S1_at At1g15430 - - 3e+0 At2g31305 INH3 (INHIBITOR-3) O.I. H.G. S.X.
0.19 12.8 Zm.888.1.S1_at At1g15430 hypothetical protein LOC100216750 - 1e-7 At1g08880 H2AXA O.I. H.G. S.X.
0.13 6.8 Zm.6564.1.A1_at At1g15430 hypothetical protein LOC100272535 - 2e+0 At4g34850 chalcone and stilbene synthase family protein O.I. H.G. S.X.

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.89	96.8	Zm.1216.1.A1_at	At1g15430	IDP408 protein	-	4e-1	At2g20740	-	O.I.	H.G.	S.X.
0.69	86.5	Zm.423.1.S1_at	At1g15430	starch synthase isoform zSTSII-2	-	3e-7	At3g01180	AtSS2 (starch synthase 2)	O.I.	H.G.	S.X.
0.48	61.3	Zm.5086.2.S1_at	At1g15430	hypothetical protein LOC100277068	-	2e+0	At3g13686	unknown protein	O.I.	H.G.	S.X.
0.47	59.9	Zm.3892.1.A1_x_at	At1g15430	Elongation factor 1 alpha	-	1e-175	At1g07920	elongation factor 1-alpha / EF-1-alpha	O.I.	H.G.	S.X.
0.45	56.4	Zm.16419.1.S1_at	At1g15430	hypothetical protein LOC100276284	-	2e+1	At5g08190	NF-YB12 (NUCLEAR FACTOR Y, SUBUNIT B12)	O.I.	H.G.	S.X.
0.42	51.3	Zm.11837.1.A1_at	At1g15430	hypothetical protein LOC100275424	-	1e+0	At4g16380	metal ion binding	O.I.	H.G.	S.X.
0.41	49.7	Zm.10422.1.S1_at	At1g15430	hypothetical protein LOC100275624	-	4e+0	At2g14846	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	O.I.	H.G.	S.X.
0.40	48.5	Zm.13627.1.A1_at	At1g15430	hypothetical protein LOC100275707	-	3e-1	At2g22200	AP2 domain-containing transcription factor	O.I.	H.G.	S.X.
0.37	42.3	Zm.17747.1.S1_at	At1g15430	hypothetical protein LOC100193554	-	1e+0	At2g29390	SMO2-2 (STEROL 4-ALPHA-METHYL-OXIDASE 2-2)	O.I.	H.G.	S.X.
0.35	38.9	Zm.3786.1.S1_at	At1g15430	hypothetical protein LOC100273838	-	3e-3	At5g54680	ILR3 (iaa-leucine resistant3)	O.I.	H.G.	S.X.
0.33	36.0	Zm.2652.1.A1_at	At1g15430	-	-	1e+1	At5g18020	auxin-responsive protein, putative	O.I.	H.G.	S.X.
0.33	36.0	Zm.13198.2.A1_at	At1g15430	-	-	4e+0	At3g43432	unknown protein	O.I.	H.G.	S.X.
0.32	33.4	Zm.3436.1.A1_at	At1g15430	hypothetical protein LOC100217002	-	1e-20	At3g54190	-	O.I.	H.G.	S.X.
0.32	33.4	Zm.4285.3.A1_at	At1g15430	Dual-specificity protein-like phosphatase 2	-	2e+0	At3g53990	universal stress protein (USP) family protein	O.I.	H.G.	S.X.
0.27	24.6	Zm.9097.1.A1_at	At1g15430	-	-	1e+0	At2g17640	ATSERAT3	O.I.	H.G.	S.X.
0.27	24.6	Zm.2563.1.A1_at	At1g15430	-	-	7e-3	At4g22440	unknown protein	O.I.	H.G.	S.X.
0.26	22.7	Zm.3866.1.S1_at	At1g15430	D-amino acid oxidase	-	3e+0	At1g51760	IAR3 (IAA-ALANINE RESISTANT 3)	O.I.	H.G.	S.X.
0.25	21.3	Zm.9389.2.A1_x_at	At1g15430	catalytic/ protein phosphatase type 2C	-	1e+0	Atmg00980	-	O.I.	H.G.	S.X.
0.25	21.3	Zm.4160.1.A1_at	At1g15430	indole-3-acetate beta-glucosyltransferase	-	1e-2	At4g15550	IAGLU (INDOLE-3-ACETATE BETA-D-GLUCOSYLTRANSFERASE)	O.I.	H.G.	S.X.
0.23	18.6	ZmAffx.811.1.S1_at	At1g15430	-	-	3e+0	At2g31305	INH3 (INHIBITOR-3)	O.I.	H.G.	S.X.
0.19	12.8	Zm.888.1.S1_at	At1g15430	hypothetical protein LOC100216750	-	1e-7	At1g08880	H2AXA	O.I.	H.G.	S.X.
0.13	6.8	Zm.6564.1.A1_at	At1g15430	hypothetical protein LOC100272535	-	2e+0	At4g34850	chalcone and stilbene synthase family protein	O.I.	H.G.	S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera

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Gene ID	Os11g0471200
Gene name
Homology with Arabidopsis	Similar to At1g15430: - (HF=9e-2)
Module size	6 genes
NF	0.17
%ile	14.5

Co-expression analysis

Gene ID Os11g0471200 Gene name Homology with ArabidopsisSimilar to At1g15430: - (HF=9e-2) Module size 6 genes NF 0.17 %ile 14.5

Co-expressed genes

Click More genes

Specific experiments for the module

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgarePopulus_trichocarpaTriticum_aestivumVitis_vinifera

Gene ID Os11g0471200

Gene name
Homology with Arabidopsis Similar to At1g15430: - (HF=9e-2)

Module size 6 genes

NF 0.17

%ile 14.5

SF Genes GO ID Process Name Link to AmiGO

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera