CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os11g0471200

Gene name
Homology with Arabidopsis Similar to At1g15430: - (HF=9e-2)

Module size 6 genes

NF 0.17

%ile 14.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 87.2 0.65 Os11g0471200 AK066957.1 - Conserved hypothetical protein 9e-2 At1g15430 - O.I. H.G. S.X.
0.50 68.0 0.80 Os01g0750100 AK067329.1 - WRKY transcription factor 31 1e-11 At3g58710 WRKY69 O.I. H.G. S.X.
0.40 51.1 0.71 Os10g0186800 9638.m00950 - Nucleic acid-binding OB-fold domain containingprotein 8e+0 At5g55940 emb2731 (embryo defective 2731) O.I. H.G. S.X.
0.23 21.2 0.83 Os10g0498300 AK060338.1 - Epoxide hydrolase 2e+0 At5g59870 HTA6 O.I. H.G. S.X.
0.10 5.7 0.83 Os07g0222900 CB645570 - KDPG and KHG aldolase family protein 3e+0 At3g52720 ACA1 (ALPHA CARBONIC ANHYDRASE 1) O.I. H.G. S.X.
0.04 2.0 0.83 Os01g0343500 AK071988.1 - TPR repeat containing protein 9e-10 At3g05625 binding O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
38.5 99.8 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
15.7 98.7 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
11.4 98.2 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.8 98.1 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.6 98.1 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.2 98.0 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.8 98.0 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.6 97.9 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.5 97.9 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.4 97.9 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

A co-expression module including the grape gene, 1612980_at, orthologous to the query gene, Os11g0471200

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.73 90.8 1612980_at At1g15430 - - 4e+0 At4g12090 cornichon family protein O.I. H.G. S.X.
0.33 45.7 1617013_at At1g15430 - - 8e-1 At3g29000 calcium-binding EF hand family protein O.I. H.G. S.X.
0.31 41.3 1621379_at At1g15430 hypothetical protein LOC100267719 - 2e-4 At1g26750 unknown protein O.I. H.G. S.X.
0.30 39.4 1616996_at At1g15430 hypothetical protein LOC100240950 - 1e+0 At1g32540 LOL1 (LSD ONE LIKE 1) O.I. H.G. S.X.
0.26 32.0 1618669_at At1g15430 hypothetical protein LOC100258243 - 2e-69 At1g59760 ATP-dependent RNA helicase, putative O.I. H.G. S.X.
0.24 28.7 1621310_at At1g15430 hypothetical protein LOC100244933 - 1e+0 At1g51300 acyl-protein thioesterase-related O.I. H.G. S.X.
0.24 28.7 1614206_at At1g15430 hypothetical protein LOC100246568 - 7e-82 At1g10760 SEX1 (STARCH EXCESS 1) O.I. H.G. S.X.
0.23 27.5 1606466_at At1g15430 hypothetical protein LOC100250341 - 1e-80 At1g79830 GC5 (golgin candidate 5) O.I. H.G. S.X.
0.21 24.0 1619040_at At1g15430 hypothetical protein LOC100265941 - 3e-57 At3g20800 rcd1-like cell differentiation protein, putative O.I. H.G. S.X.
0.21 24.0 1618321_at At1g15430 hypothetical protein LOC100260152 - 1e-18 At1g71350 eukaryotic translation initiation factor SUI1 family protein O.I. H.G. S.X.
0.19 20.9 1615443_at At1g15430 hypothetical protein LOC100266172 - 6e-2 At5g14250 COP13 (CONSTITUTIVE PHOTOMORPHOGENIC 13) O.I. H.G. S.X.
0.18 19.4 1617622_at At1g15430 hypothetical protein LOC100254784 - 6e-5 At5g03330 OTU-like cysteine protease family protein O.I. H.G. S.X.
0.18 19.4 1608275_at At1g15430 hypothetical protein LOC100261523 - 1e-13 At3g60240 - O.I. H.G. S.X.
0.16 16.7 1607001_at At1g15430 hypothetical protein LOC100259087 - 0 At1g75780 TUB1 O.I. H.G. S.X.
0.15 15.6 1618387_at At1g15430 hypothetical protein LOC100249044 - 4e-25 At2g01970 endomembrane protein 70, putative O.I. H.G. S.X.
0.08 8.5 1617145_at At1g15430 - - 2e+0 At5g52210 ATGB1 (ARABIDOPSIS THALIANA GTP-BINDING PROTEIN 1) O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Zea_mays

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