CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os11g0471200

Gene name
Homology with Arabidopsis Similar to At1g15430: - (HF=9e-2)

Module size 6 genes

NF 0.17

%ile 14.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 87.2 0.65 Os11g0471200 AK066957.1 - Conserved hypothetical protein 9e-2 At1g15430 - O.I. H.G. S.X.
0.50 68.0 0.80 Os01g0750100 AK067329.1 - WRKY transcription factor 31 1e-11 At3g58710 WRKY69 O.I. H.G. S.X.
0.40 51.1 0.71 Os10g0186800 9638.m00950 - Nucleic acid-binding OB-fold domain containingprotein 8e+0 At5g55940 emb2731 (embryo defective 2731) O.I. H.G. S.X.
0.23 21.2 0.83 Os10g0498300 AK060338.1 - Epoxide hydrolase 2e+0 At5g59870 HTA6 O.I. H.G. S.X.
0.10 5.7 0.83 Os07g0222900 CB645570 - KDPG and KHG aldolase family protein 3e+0 At3g52720 ACA1 (ALPHA CARBONIC ANHYDRASE 1) O.I. H.G. S.X.
0.04 2.0 0.83 Os01g0343500 AK071988.1 - TPR repeat containing protein 9e-10 At3g05625 binding O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.67	87.2	0.65	Os11g0471200	AK066957.1	-	Conserved hypothetical protein	9e-2	At1g15430	-	O.I.	H.G.	S.X.
0.50	68.0	0.80	Os01g0750100	AK067329.1	-	WRKY transcription factor 31	1e-11	At3g58710	WRKY69	O.I.	H.G.	S.X.
0.40	51.1	0.71	Os10g0186800	9638.m00950	-	Nucleic acid-binding OB-fold domain containingprotein	8e+0	At5g55940	emb2731 (embryo defective 2731)	O.I.	H.G.	S.X.
0.23	21.2	0.83	Os10g0498300	AK060338.1	-	Epoxide hydrolase	2e+0	At5g59870	HTA6	O.I.	H.G.	S.X.
0.10	5.7	0.83	Os07g0222900	CB645570	-	KDPG and KHG aldolase family protein	3e+0	At3g52720	ACA1 (ALPHA CARBONIC ANHYDRASE 1)	O.I.	H.G.	S.X.
0.04	2.0	0.83	Os01g0343500	AK071988.1	-	TPR repeat containing protein	9e-10	At3g05625	binding	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
38.5 99.8 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
15.7 98.7 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
11.4 98.2 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.8 98.1 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.6 98.1 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.2 98.0 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.8 98.0 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.6 97.9 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.5 97.9 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.4 97.9 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
38.5	99.8	GSM422674	Musa_DNA_RICE	GSE16865	Heterologous microarrays for the study of drought stress in Musa
15.7	98.7	GSM422672	Drought	GSE16865	Heterologous microarrays for the study of drought stress in Musa
11.4	98.2	GSM377074	Genomic DNA - 45 day old leaf sample - mutant g282	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.8	98.1	GSM377077	Genomic DNA - 45 day old leaf sample - mutant g6489	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.6	98.1	GSM377078	Genomic DNA - 45 day old leaf sample - mutant g6603	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.2	98.0	GSM377081	Genomic DNA - 45 day old leaf sample - mutant g7534	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.8	98.0	GSM377075	Genomic DNA - 45 day old leaf sample - mutant g650	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.6	97.9	GSM377086	Genomic DNA - 45 day old leaf sample - IR64 wtcheck	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.5	97.9	GSM377070	Genomic DNA - 45 day old leaf sample - mutant d1	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.4	97.9	GSM377071	Genomic DNA - 45 day old leaf sample - mutant d256	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

A co-expression module including the barley gene, Contig7955_s_at, orthologous to the query gene, Os11g0471200

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.96 99.4 Contig7955_s_at At1g15430 - - 4e-4 At3g45860 receptor-like protein kinase, putative O.I. H.G. S.X.
0.37 47.9 HW08B21u_s_at At1g15430 - - 1e+1 At5g23903 unknown protein O.I. H.G. S.X.
0.34 43.6 Contig25404_at At1g15430 - - 3e-1 At1g32880 importin alpha-1 subunit, putative O.I. H.G. S.X.
0.32 40.3 Contig7549_at At1g15430 - - 3e-3 At1g18210 calcium-binding protein, putative O.I. H.G. S.X.
0.30 37.0 Contig15424_at At1g15430 - - 2e+1 At1g03950 VPS2.3 (VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 2.3) O.I. H.G. S.X.
0.30 37.0 Contig10313_at At1g15430 - - 1e-18 At4g34830 - O.I. H.G. S.X.
0.30 37.0 Contig3229_s_at At1g15430 - - 7e+0 At5g54410 unknown protein O.I. H.G. S.X.
0.29 35.5 HM02H15u_s_at At1g15430 - - 5e+0 At2g16030 methyltransferase O.I. H.G. S.X.
0.29 35.5 Contig3420_at At1g15430 - - 5e-66 At5g67380 CKA1 (CASEIN KINASE ALPHA 1) O.I. H.G. S.X.
0.29 35.5 HVSMEb0001F21r2_x_at At1g15430 - - 4e+0 At5g48170 SLY2 (SLEEPY2) O.I. H.G. S.X.
0.28 35.5 Contig6283_at At1g15430 - - 1e-1 At3g60410 unknown protein O.I. H.G. S.X.
0.26 30.4 Contig5265_at At1g15430 - - 9e-74 At5g20890 chaperonin, putative O.I. H.G. S.X.
0.26 30.4 Contig372_s_at At1g15430 - - 4e+0 At3g17130 invertase/pectin methylesterase inhibitor family protein O.I. H.G. S.X.
0.25 28.9 Contig12861_at At1g15430 - - 1e-8 At3g05420 ACBP4 (ACYL-COA BINDING PROTEIN 4) O.I. H.G. S.X.
0.25 28.9 Contig19458_at At1g15430 - - 2e+0 At4g29100 ethylene-responsive family protein O.I. H.G. S.X.
0.25 28.9 Contig22949_at At1g15430 - - 3e+0 At2g43280 far-red impaired responsive family protein / FAR1 family protein O.I. H.G. S.X.
0.23 26.1 Contig2940_s_at At1g15430 - - 5e-6 At2g47380 cytochrome c oxidase subunit Vc family protein / COX5C family protein O.I. H.G. S.X.
0.23 26.1 Contig11530_at At1g15430 - - 3e+0 At5g07190 ATS3 (ARABIDOPSIS THALIANA SEED GENE 3) O.I. H.G. S.X.
0.21 22.6 Contig3559_at At1g15430 - - 1e-86 At1g24510 T-complex protein 1 epsilon subunit, putative / TCP-1-epsilon, putative / chaperonin, putative O.I. H.G. S.X.
0.19 19.6 Contig16073_at At1g15430 - - 3e-2 At5g37200 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.18 18.2 Contig9703_at At1g15430 - - 3e+0 At2g37200 integral membrane protein, putative O.I. H.G. S.X.
0.17 16.9 Contig6376_at At1g15430 - - 1e-10 At5g09900 EMB2107 (EMBRYO DEFECTIVE 2107) O.I. H.G. S.X.
0.14 12.9 Contig324_at At1g15430 - - 1e-74 At3g11510 40S ribosomal protein S14 (RPS14B) O.I. H.G. S.X.
0.14 12.9 Contig3920_at At1g15430 - - 3e-21 At5g01410 RSR4 (REDUCED SUGAR RESPONSE 4) O.I. H.G. S.X.
0.14 12.9 Contig1335_at At1g15430 - - 6e+0 At3g13970 APG12B (AUTOPHAGY 12 B) O.I. H.G. S.X.
0.12 10.4 Contig5540_at At1g15430 - - 1e-52 At3g05840 ATSK12 O.I. H.G. S.X.

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.96	99.4	Contig7955_s_at	At1g15430	-	-	4e-4	At3g45860	receptor-like protein kinase, putative	O.I.	H.G.	S.X.
0.37	47.9	HW08B21u_s_at	At1g15430	-	-	1e+1	At5g23903	unknown protein	O.I.	H.G.	S.X.
0.34	43.6	Contig25404_at	At1g15430	-	-	3e-1	At1g32880	importin alpha-1 subunit, putative	O.I.	H.G.	S.X.
0.32	40.3	Contig7549_at	At1g15430	-	-	3e-3	At1g18210	calcium-binding protein, putative	O.I.	H.G.	S.X.
0.30	37.0	Contig15424_at	At1g15430	-	-	2e+1	At1g03950	VPS2.3 (VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 2.3)	O.I.	H.G.	S.X.
0.30	37.0	Contig10313_at	At1g15430	-	-	1e-18	At4g34830	-	O.I.	H.G.	S.X.
0.30	37.0	Contig3229_s_at	At1g15430	-	-	7e+0	At5g54410	unknown protein	O.I.	H.G.	S.X.
0.29	35.5	HM02H15u_s_at	At1g15430	-	-	5e+0	At2g16030	methyltransferase	O.I.	H.G.	S.X.
0.29	35.5	Contig3420_at	At1g15430	-	-	5e-66	At5g67380	CKA1 (CASEIN KINASE ALPHA 1)	O.I.	H.G.	S.X.
0.29	35.5	HVSMEb0001F21r2_x_at	At1g15430	-	-	4e+0	At5g48170	SLY2 (SLEEPY2)	O.I.	H.G.	S.X.
0.28	35.5	Contig6283_at	At1g15430	-	-	1e-1	At3g60410	unknown protein	O.I.	H.G.	S.X.
0.26	30.4	Contig5265_at	At1g15430	-	-	9e-74	At5g20890	chaperonin, putative	O.I.	H.G.	S.X.
0.26	30.4	Contig372_s_at	At1g15430	-	-	4e+0	At3g17130	invertase/pectin methylesterase inhibitor family protein	O.I.	H.G.	S.X.
0.25	28.9	Contig12861_at	At1g15430	-	-	1e-8	At3g05420	ACBP4 (ACYL-COA BINDING PROTEIN 4)	O.I.	H.G.	S.X.
0.25	28.9	Contig19458_at	At1g15430	-	-	2e+0	At4g29100	ethylene-responsive family protein	O.I.	H.G.	S.X.
0.25	28.9	Contig22949_at	At1g15430	-	-	3e+0	At2g43280	far-red impaired responsive family protein / FAR1 family protein	O.I.	H.G.	S.X.
0.23	26.1	Contig2940_s_at	At1g15430	-	-	5e-6	At2g47380	cytochrome c oxidase subunit Vc family protein / COX5C family protein	O.I.	H.G.	S.X.
0.23	26.1	Contig11530_at	At1g15430	-	-	3e+0	At5g07190	ATS3 (ARABIDOPSIS THALIANA SEED GENE 3)	O.I.	H.G.	S.X.
0.21	22.6	Contig3559_at	At1g15430	-	-	1e-86	At1g24510	T-complex protein 1 epsilon subunit, putative / TCP-1-epsilon, putative / chaperonin, putative	O.I.	H.G.	S.X.
0.19	19.6	Contig16073_at	At1g15430	-	-	3e-2	At5g37200	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.
0.18	18.2	Contig9703_at	At1g15430	-	-	3e+0	At2g37200	integral membrane protein, putative	O.I.	H.G.	S.X.
0.17	16.9	Contig6376_at	At1g15430	-	-	1e-10	At5g09900	EMB2107 (EMBRYO DEFECTIVE 2107)	O.I.	H.G.	S.X.
0.14	12.9	Contig324_at	At1g15430	-	-	1e-74	At3g11510	40S ribosomal protein S14 (RPS14B)	O.I.	H.G.	S.X.
0.14	12.9	Contig3920_at	At1g15430	-	-	3e-21	At5g01410	RSR4 (REDUCED SUGAR RESPONSE 4)	O.I.	H.G.	S.X.
0.14	12.9	Contig1335_at	At1g15430	-	-	6e+0	At3g13970	APG12B (AUTOPHAGY 12 B)	O.I.	H.G.	S.X.
0.12	10.4	Contig5540_at	At1g15430	-	-	1e-52	At3g05840	ATSK12	O.I.	H.G.	S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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Gene ID	Os11g0471200
Gene name
Homology with Arabidopsis	Similar to At1g15430: - (HF=9e-2)
Module size	6 genes
NF	0.17
%ile	14.5

Co-expression analysis

Gene ID Os11g0471200 Gene name Homology with ArabidopsisSimilar to At1g15430: - (HF=9e-2) Module size 6 genes NF 0.17 %ile 14.5

Co-expressed genes

Click More genes

Specific experiments for the module

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxPopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID Os11g0471200

Gene name
Homology with Arabidopsis Similar to At1g15430: - (HF=9e-2)

Module size 6 genes

NF 0.17

%ile 14.5

SF Genes GO ID Process Name Link to AmiGO

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays