CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os11g0460800

Gene name
Homology with Arabidopsis Similar to At5g36180: scpl1 (serine carboxypeptidase-like 1) (HF=6e-5)

Module size 12 genes

NF 0.64

%ile 86.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.82 95.0 0.82 Os11g0460800 AK066902.1 - Peptidase S10, serine carboxypeptidase familyprotein 6e-5 At5g36180 scpl1 (serine carboxypeptidase-like 1) O.I. H.G. S.X.
0.69 87.9 0.85 Os06g0317600 AK120680.1 - Glycine rich family protein 9e-5 At1g61255 - O.I. H.G. S.X.
0.67 87.2 0.85 Os12g0563600 AK069514.1 - Protein of unknown function DUF538 family protein 3e-2 At1g28190 unknown protein O.I. H.G. S.X.
0.67 87.2 0.91 Os03g0832800 AK062843.1 - Phospholipid/glycerol acyltransferase familyprotein 4e-2 At4g00400 GPAT8 (glycerol-3-phosphate acyltransferase 8) O.I. H.G. S.X.
0.64 83.4 0.92 Os06g0149100 AK099064.1 - Lipolytic enzyme, G-D-S-L family protein 3e+0 At5g22810 GDSL-motif lipase, putative O.I. H.G. S.X.
0.63 82.7 0.91 Os01g0106300 AK119550.1 - Isoflavone reductase homolog IRL (EC 1.3.1.-) 6e-1 At2g34200 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.59 78.0 0.88 Os04g0305700 AK068128.1 - UDP-glucuronosyl/UDP-glucosyltransferase familyprotein 2e-1 At2g43010 PIF4 (phytochrome interacting factor 4) O.I. H.G. S.X.
0.58 77.0 0.88 Os04g0354600 AK065894.1 - Male sterility protein family protein 4e+0 At1g35333 unknown protein O.I. H.G. S.X.
0.57 77.0 0.89 Os09g0373200 AK109686.1 - Strictosidine synthase family protein 2e-1 At5g20540 ATBRXL4 (BREVIS RADIX-LIKE 4) O.I. H.G. S.X.
0.52 69.6 0.88 Os01g0878900 AK104652.1 - 4,5-DOPA dioxygenase extradiol 2e+0 At5g06210 RNA-binding protein, putative O.I. H.G. S.X.
0.50 68.0 0.92 Os04g0353600 CB641510 - Male sterility protein family protein 2e+0 At1g35333 unknown protein O.I. H.G. S.X.
0.42 53.9 0.89 Os12g0411700 BI806808 - ABC transporter related domain containing protein 9e-1 At1g60660 CB5LP (CYTOCHROME B5-LIKE PROTEIN) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
14.1 98.5 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
13.5 98.5 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.3 98.4 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.8 98.4 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.0 98.3 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.6 98.2 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.3 98.2 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.2 98.2 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.1 98.2 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.1 98.2 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.014 1 GO:0009058 The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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