CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os11g0439600

Gene name
Homology with Arabidopsis Similar to At5g18280: ATAPY2 (ARABIDOPSIS THALIANA APYRASE 2) (HF=2e-1)

Module size 8 genes

NF 0.31

%ile 33.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.55 73.7 0.75 Os11g0439600 AK069955.1 - Nod factor binding lectin-nucleotidephosphohydrolase 2e-1 At5g18280 ATAPY2 (ARABIDOPSIS THALIANA APYRASE 2) O.I. H.G. S.X.
0.55 73.7 0.82 Os03g0804200 9631.m05800 - Plant lipid transfer protein/Par allergen familyprotein 3e-1 At2g36100 integral membrane family protein O.I. H.G. S.X.
0.53 71.3 0.82 Os03g0730500 AK066477.1 - Peptidase S10, serine carboxypeptidase familyprotein 6e-2 At2g23000 scpl10 (serine carboxypeptidase-like 10) O.I. H.G. S.X.
0.29 31.1 0.77 Os10g0472900 AK120294.1 - Naringenin-chalcone synthase family protein 3e-2 At1g07720 KCS3 (3-KETOACYL-COA SYNTHASE 3) O.I. H.G. S.X.
0.27 27.5 0.82 Os05g0456300 AK068616.1 - Aldose reductase 3e-6 At2g37790 aldo/keto reductase family protein O.I. H.G. S.X.
0.23 21.2 0.86 Os08g0401500 AK068301.1 - Mandelonitrile lyase-like protein 1e-12 At1g72970 HTH (HOTHEAD) O.I. H.G. S.X.
0.14 9.3 0.86 Os08g0460000 AB010876.1 - Germin-like protein 5 (Germin-like protein 1) 5e-1 At3g51060 STY1 (STYLISH 1) O.I. H.G. S.X.
0.13 8.2 0.82 Os10g0150400 CF308064 - Protein of unknown function DUF1210 family protein 2e+0 At5g14340 AtMYB40 (myb domain protein 40) O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
20.3 99.1 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
17.1 98.8 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.4 98.8 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.9 98.7 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.5 98.7 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.5 98.7 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.2 98.7 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.0 98.6 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.9 98.6 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.3 98.6 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.014 1 GO:0009058 The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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