CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os11g0432600

Gene name
Homology with Arabidopsis Similar to At4g31580: SRZ-22 (HF=3e+0)

Module size 6 genes

NF 0.18

%ile 16.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.55 73.7 0.82 Os11g0432600 AK059916.1 - Beta-ketoacyl reductase GL8B 3e+0 At4g31580 SRZ-22 O.I. H.G. S.X.
0.53 71.3 0.82 Os03g0859100 AK060992.1 - Lipolytic enzyme, G-D-S-L family protein 2e-1 At5g40630 ubiquitin family protein O.I. H.G. S.X.
0.53 71.3 0.79 Os09g0360500 AK105487.1 - Conserved hypothetical protein 1e-2 At5g48920 TED7 (TRACHEARY ELEMENT DIFFERENTIATION-RELATED 7) O.I. H.G. S.X.
0.43 55.4 0.82 Os01g0529800 AK101002.1 - The start codon is not identified. 3e-4 At1g25450 KCS5 (3-KETOACYL-COA SYNTHASE 5) O.I. H.G. S.X.
0.09 4.9 0.81 Os01g0799500 AU066087 - Methyladenine glycosylase family protein 1e-8 At3g12710 methyladenine glycosylase family protein O.I. H.G. S.X.
0.06 3.0 0.81 Os09g0414500 AK058840.1 - ZF-HD homeobox protein 5e-3 At3g28917 MIF2 (MINI ZINC FINGER 2) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
37.8 99.8 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
25.0 99.5 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
22.7 99.3 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
12.8 98.4 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.5 98.3 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.2 98.3 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.0 98.3 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.0 98.3 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.2 98.2 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.2 98.2 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.045 1 GO:0006281 The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage