CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os11g0310800

Gene name
Homology with Arabidopsis Similar to At1g27900: RNA helicase, putative (HF=2e-11)

Module size 7 genes

NF 0.20

%ile 18.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.63 82.7 0.93 Os11g0310800 AK101122.1 - Helicase-associated region domain containingprotein 2e-11 At1g27900 RNA helicase, putative O.I. H.G. S.X.
0.27 27.5 0.94 Os02g0497500 AK106285.1 - Recombination/repair protein Rad50 family protein 4e-7 At2g31970 RAD50 O.I. H.G. S.X.
0.25 24.1 0.94 Os03g0145700 AK102483.1 - Conserved hypothetical protein 2e-2 At5g14200 3-isopropylmalate dehydrogenase, chloroplast, putative O.I. H.G. S.X.
0.21 17.9 0.94 Os01g0685500 AK064463.1 - ATP-dependent DNA ligase family protein 3e-13 At1g66730 ATP dependent DNA ligase family protein O.I. H.G. S.X.
0.21 17.9 0.94 Os12g0489400 AK120086.1 - Hypothetical protein 8e-1 At1g05291 unknown protein O.I. H.G. S.X.
0.15 10.3 0.94 Os08g0519700 AK073429.1 - Protein of unknown function DUF630 domaincontaining protein 1e-4 At2g38330 MATE efflux family protein O.I. H.G. S.X.
0.09 4.9 0.94 Os06g0474900 AK107179.1 - Conserved hypothetical protein 8e-7 At4g36280 ATP-binding region, ATPase-like domain-containing protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
53.5 99.9 GSM195227 Anther GSE7951 Genome-wide gene expression profiling of rice stigma
40.9 99.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
27.4 99.6 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
14.3 98.6 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.1 98.3 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.5 98.1 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.4 98.1 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.6 97.9 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.9 97.8 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.7 97.8 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.044 1 GO:0006281 The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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