CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os11g0307600

Gene name
Homology with Arabidopsis Similar to At2g44390: DC1 domain-containing protein (HF=2e-2)

Module size 7 genes

NF 0.39

%ile 47.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.59 78.0 0.94 Os11g0307600 AK070683.1 - Conserved hypothetical protein 2e-2 At2g44390 DC1 domain-containing protein O.I. H.G. S.X.
0.67 87.2 0.94 Os01g0210100 NM_197507.1 - - 2e+0 At5g38760 unknown protein O.I. H.G. S.X.
0.61 81.2 0.92 Os11g0280500 AK071642.1 - Hypothetical protein 2e-1 At4g26840 SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1) O.I. H.G. S.X.
0.40 51.1 0.94 Os05g0580550 9633.m04745 - - 2e+0 At5g35680 eukaryotic translation initiation factor 1A, putative / eIF-1A, putative / eIF-4C, putative O.I. H.G. S.X.
0.40 51.1 0.94 Os01g0578700 AK099956.1 - Hypothetical protein 2e+0 At5g63370 protein kinase family protein O.I. H.G. S.X.
0.36 44.0 0.94 Os11g0258900 AK102638.1 - Conserved hypothetical protein 9e-1 At5g38760 unknown protein O.I. H.G. S.X.
0.13 8.2 0.94 Os01g0889200 AK062351.1 - RNA polymerase III RPC4 family protein 4e-1 At3g60080 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
70.8 99.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
44.3 99.9 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
33.5 99.8 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
10.8 98.1 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.9 98.0 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.9 98.0 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.7 98.0 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.6 97.9 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.1 97.9 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.9 97.8 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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