Co-expression analysis

Gene ID Os11g0274100
Gene name
Homology with ArabidopsisSimilar to At3g60580: zinc finger (C2H2 type) family protein (HF=3e-1)
Module size 6 genes
NF 0.06
%ile 4.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.4458.10.70Os11g02741009639.m01594-Protein kinase domain containing protein3e-1At3g60580zinc finger (C2H2 type) family proteinO.I.H.G.S.X.
0.2727.50.75Os07g06386009635.m04465-Peroxidase 16e-10At5g40150peroxidase, putativeO.I.H.G.S.X.
0.2422.40.70Os01g0126900AK109876.1-contains InterPro domain(s): IPR001117, IPR0089722e-1At1g23010LPR1 (Low Phosphate Root1)O.I.H.G.S.X.
0.084.20.78Os01g02943009629.m01849--2e+0At4g36430peroxidase, putativeO.I.H.G.S.X.
0.052.50.72Os04g0545700AU033092-Conserved hypothetical protein4e-1At5g50510-O.I.H.G.S.X.
0.021.00.70Os11g0138900AK059449.1-Esterase/lipase/thioesterase domain containingprotein2e-1At2g05510glycine-rich proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
60.799.9GSM422676ControlGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
19.299.0GSM422672DroughtGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
12.898.4GSM377075Genomic DNA - 45 day old leaf sample - mutant g650GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
11.998.3GSM377085Genomic DNA - 45 day old leaf sample - mutant f2045GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
11.898.3GSM377081Genomic DNA - 45 day old leaf sample - mutant g7534GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
11.698.2GSM377074Genomic DNA - 45 day old leaf sample - mutant g282GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
10.798.1GSM377078Genomic DNA - 45 day old leaf sample - mutant g6603GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
9.998.0GSM377070Genomic DNA - 45 day old leaf sample - mutant d1GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
9.998.0GSM377082Genomic DNA - 45 day old leaf sample - mutant g9799GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
9.998.0GSM377077Genomic DNA - 45 day old leaf sample - mutant g6489GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.0221GO:0006979A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals.Link to AmiGO

Inter-species module comparison

A co-expression module including the grape gene, 1622246_at, orthologous to the query gene, Os11g0274100

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9599.61622246_atAt3g60580--2e-1At4g34800auxin-responsive family proteinO.I.H.G.S.X.
0.3853.61615522_atAt3g60580--7e+0At5g16870aminoacyl-tRNA hydrolaseO.I.H.G.S.X.
0.3853.61620867_atAt3g60580hypothetical protein LOC100246928-8e-2At1g28680transferase family proteinO.I.H.G.S.X.
0.3548.51614836_s_atAt3g60580S-adenosylmethionine synthetase 5-0At1g02500SAM1 (S-ADENOSYLMETHIONINE SYNTHETASE 1)O.I.H.G.S.X.
0.2937.71612984_atAt3g60580hypothetical protein LOC100256822-5e-3At2g36290hydrolase, alpha/beta fold family proteinO.I.H.G.S.X.
0.1718.21614825_atAt3g60580hypothetical protein LOC100257887-4e-27At1g243603-oxoacyl-(acyl-carrier protein) reductase, chloroplast / 3-ketoacyl-acyl carrier protein reductaseO.I.H.G.S.X.
0.056.01613410_s_atAt3g60580similar to plastid acyl carrier protein-4e-4At1g54580ACP2 (ACYL CARRIER PROTEIN 2)O.I.H.G.S.X.
0.056.01619205_atAt3g60580hypothetical protein LOC100247421-1e+1At5g25570unknown proteinO.I.H.G.S.X.
0.023.21606515_atAt3g60580--4e-1At1g15340MBD10O.I.H.G.S.X.
0.023.21610506_atAt3g60580--3e-7At5g18270ANAC087O.I.H.G.S.X.
0.012.11616047_s_atAt3g60580hypothetical protein LOC100266255-9e+0At5g05113unknown proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Zea_mays



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