Co-expression analysis

Gene ID Os11g0274100
Gene name
Homology with ArabidopsisSimilar to At3g60580: zinc finger (C2H2 type) family protein (HF=3e-1)
Module size 6 genes
NF 0.06
%ile 4.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.4458.10.70Os11g02741009639.m01594-Protein kinase domain containing protein3e-1At3g60580zinc finger (C2H2 type) family proteinO.I.H.G.S.X.
0.2727.50.75Os07g06386009635.m04465-Peroxidase 16e-10At5g40150peroxidase, putativeO.I.H.G.S.X.
0.2422.40.70Os01g0126900AK109876.1-contains InterPro domain(s): IPR001117, IPR0089722e-1At1g23010LPR1 (Low Phosphate Root1)O.I.H.G.S.X.
0.084.20.78Os01g02943009629.m01849--2e+0At4g36430peroxidase, putativeO.I.H.G.S.X.
0.052.50.72Os04g0545700AU033092-Conserved hypothetical protein4e-1At5g50510-O.I.H.G.S.X.
0.021.00.70Os11g0138900AK059449.1-Esterase/lipase/thioesterase domain containingprotein2e-1At2g05510glycine-rich proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
60.799.9GSM422676ControlGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
19.299.0GSM422672DroughtGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
12.898.4GSM377075Genomic DNA - 45 day old leaf sample - mutant g650GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
11.998.3GSM377085Genomic DNA - 45 day old leaf sample - mutant f2045GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
11.898.3GSM377081Genomic DNA - 45 day old leaf sample - mutant g7534GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
11.698.2GSM377074Genomic DNA - 45 day old leaf sample - mutant g282GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
10.798.1GSM377078Genomic DNA - 45 day old leaf sample - mutant g6603GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
9.998.0GSM377070Genomic DNA - 45 day old leaf sample - mutant d1GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
9.998.0GSM377082Genomic DNA - 45 day old leaf sample - mutant g9799GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
9.998.0GSM377077Genomic DNA - 45 day old leaf sample - mutant g6489GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.0221GO:0006979A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals.Link to AmiGO

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.95826.1.A1_at, orthologous to the query gene, Os11g0274100

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.5984.9PtpAffx.95826.1.A1_atAt3g60580--2e-12At1g34300lectin protein kinase family proteinO.I.H.G.S.X.
0.3458.3PtpAffx.1165.1.A1_atAt3g60580predicted membrane protein /// predicted membrane protein-1e-26At1g68650unknown proteinO.I.H.G.S.X.
0.2950.5Ptp.3296.2.S1_s_atAt3g60580hypothetical protein-7e-1At1g42680myosin-relatedO.I.H.G.S.X.
0.2747.1PtpAffx.32419.2.S1_atAt3g60580hypothetical protein-2e-13At4g37540LBD39 (LOB DOMAIN-CONTAINING PROTEIN 39)O.I.H.G.S.X.
0.2747.1PtpAffx.219504.1.S1_atAt3g60580hypothetical protein-3e-1At3g52930fructose-bisphosphate aldolase, putativeO.I.H.G.S.X.
0.2543.6PtpAffx.93279.1.A1_atAt3g60580hypothetical protein-4e+0At5g58900myb family transcription factorO.I.H.G.S.X.
0.2340.5PtpAffx.59925.1.S1_atAt3g60580hypothetical protein-2e+0At1g43720unknown proteinO.I.H.G.S.X.
0.2136.5PtpAffx.3081.1.S1_atAt3g60580hypothetical protein-1e+0At3g56380ARR17 (ARABIDOPSIS RESPONSE REGULATOR 17)O.I.H.G.S.X.
0.1932.7Ptp.4753.1.S1_atAt3g60580hypothetical protein-2e-1At3g24330glycosyl hydrolase family 17 proteinO.I.H.G.S.X.
0.1729.1PtpAffx.24328.3.A1_a_atAt3g60580hypothetical protein-1e-10At2g17770ATBZIP27O.I.H.G.S.X.
0.1626.9PtpAffx.8635.1.S1_a_atAt3g60580hypothetical protein-4e-23At4g32180ATPANK2 (PANTOTHENATE KINASE 2)O.I.H.G.S.X.
0.1525.3PtpAffx.30957.1.A1_atAt3g60580--1e-9At3g14640CYP72A10O.I.H.G.S.X.
0.1423.5PtpAffx.136492.1.S1_s_atAt3g60580hypothetical protein-3e-1At1g68185ubiquitin-relatedO.I.H.G.S.X.
0.1219.6Ptp.4275.2.S1_atAt3g60580hypothetical protein-3e-7At5g53940yippee family proteinO.I.H.G.S.X.
0.1219.6PtpAffx.80681.1.A1_atAt3g60580hypothetical protein-4e+0At5g36080unknown proteinO.I.H.G.S.X.
0.1016.3PtpAffx.132090.1.A1_s_atAt3g60580hypothetical protein-7e-12At1g78050PGM (PHOSPHOGLYCERATE/BISPHOSPHOGLYCERATE MUTASE)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Triticum_aestivum
Vitis_vinifera
Zea_mays



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