CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os11g0274100

Gene name
Homology with Arabidopsis Similar to At3g60580: zinc finger (C2H2 type) family protein (HF=3e-1)

Module size 6 genes

NF 0.06

%ile 4.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.44 58.1 0.70 Os11g0274100 9639.m01594 - Protein kinase domain containing protein 3e-1 At3g60580 zinc finger (C2H2 type) family protein O.I. H.G. S.X.
0.27 27.5 0.75 Os07g0638600 9635.m04465 - Peroxidase 1 6e-10 At5g40150 peroxidase, putative O.I. H.G. S.X.
0.24 22.4 0.70 Os01g0126900 AK109876.1 - contains InterPro domain(s): IPR001117, IPR008972 2e-1 At1g23010 LPR1 (Low Phosphate Root1) O.I. H.G. S.X.
0.08 4.2 0.78 Os01g0294300 9629.m01849 - - 2e+0 At4g36430 peroxidase, putative O.I. H.G. S.X.
0.05 2.5 0.72 Os04g0545700 AU033092 - Conserved hypothetical protein 4e-1 At5g50510 - O.I. H.G. S.X.
0.02 1.0 0.70 Os11g0138900 AK059449.1 - Esterase/lipase/thioesterase domain containingprotein 2e-1 At2g05510 glycine-rich protein O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
60.7 99.9 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
19.2 99.0 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
12.8 98.4 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.9 98.3 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.8 98.3 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.6 98.2 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.7 98.1 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.9 98.0 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.9 98.0 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.9 98.0 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.022 1 GO:0006979 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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