CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os11g0258900

Gene name
Homology with Arabidopsis Similar to At5g38760: unknown protein (HF=9e-1)

Module size 6 genes

NF 0.46

%ile 58.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.9 0.94 Os11g0258900 AK102638.1 - Conserved hypothetical protein 9e-1 At5g38760 unknown protein O.I. H.G. S.X.
0.50 68.0 0.95 Os01g0210100 NM_197507.1 - - 2e+0 At5g38760 unknown protein O.I. H.G. S.X.
0.50 68.0 0.96 Os01g0840900 AK063699.1 - Hypothetical protein 2e-1 At1g71090 auxin efflux carrier family protein O.I. H.G. S.X.
0.36 44.0 0.95 Os08g0158800 AK107200.1 - Hypothetical protein 2e-1 At1g44191 - O.I. H.G. S.X.
0.29 31.1 0.94 Os11g0307600 AK070683.1 - Conserved hypothetical protein 2e-2 At2g44390 DC1 domain-containing protein O.I. H.G. S.X.
0.20 16.5 0.94 Os03g0158700 AK071242.1 - - 9e+0 At4g24060 Dof-type zinc finger domain-containing protein O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.91	98.9	0.94	Os11g0258900	AK102638.1	-	Conserved hypothetical protein	9e-1	At5g38760	unknown protein	O.I.	H.G.	S.X.
0.50	68.0	0.95	Os01g0210100	NM_197507.1	-	-	2e+0	At5g38760	unknown protein	O.I.	H.G.	S.X.
0.50	68.0	0.96	Os01g0840900	AK063699.1	-	Hypothetical protein	2e-1	At1g71090	auxin efflux carrier family protein	O.I.	H.G.	S.X.
0.36	44.0	0.95	Os08g0158800	AK107200.1	-	Hypothetical protein	2e-1	At1g44191	-	O.I.	H.G.	S.X.
0.29	31.1	0.94	Os11g0307600	AK070683.1	-	Conserved hypothetical protein	2e-2	At2g44390	DC1 domain-containing protein	O.I.	H.G.	S.X.
0.20	16.5	0.94	Os03g0158700	AK071242.1	-	-	9e+0	At4g24060	Dof-type zinc finger domain-containing protein	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
27.6 99.6 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
11.1 98.2 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.2 98.0 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.7 97.8 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.3 97.7 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
8.0 97.6 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.9 97.6 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.8 97.6 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.9 97.3 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.7 97.3 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
27.6	99.6	GSM422676	Control	GSE16865	Heterologous microarrays for the study of drought stress in Musa
11.1	98.2	GSM377075	Genomic DNA - 45 day old leaf sample - mutant g650	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.2	98.0	GSM377084	Genomic DNA - 45 day old leaf sample - mutant f1856	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.7	97.8	GSM377070	Genomic DNA - 45 day old leaf sample - mutant d1	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.3	97.7	GSM422672	Drought	GSE16865	Heterologous microarrays for the study of drought stress in Musa
8.0	97.6	GSM377073	Genomic DNA - 45 day old leaf sample - mutant d2943	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.9	97.6	GSM377081	Genomic DNA - 45 day old leaf sample - mutant g7534	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.8	97.6	GSM377076	Genomic DNA - 45 day old leaf sample - mutant g6485	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.9	97.3	GSM377071	Genomic DNA - 45 day old leaf sample - mutant d256	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.7	97.3	GSM377072	Genomic DNA - 45 day old leaf sample - mutant d1137	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

A co-expression module including the grape gene, 1613045_at, orthologous to the query gene, Os11g0258900

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.89 95.5 1613045_at At5g38760 hypothetical protein LOC100243125 - 7e-2 At5g52160 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein O.I. H.G. S.X.
0.67 87.9 1620650_s_at At5g38760 hypothetical protein LOC100255907 - 7e-5 At4g37990 ELI3-2 (ELICITOR-ACTIVATED GENE 3-2) O.I. H.G. S.X.
0.65 85.0 1619157_at At5g38760 inward rectifying shaker-like K+ channel - 3e-66 At4g18290 KAT2 (POTASSIUM CHANNEL IN ARABIDOPSIS THALIANA 2) O.I. H.G. S.X.
0.60 81.9 1616686_at At5g38760 - - 1e+0 At1g44000 unknown protein O.I. H.G. S.X.
0.54 75.7 1618021_at At5g38760 - - 4e+0 At5g08055 - O.I. H.G. S.X.
0.52 73.9 1622682_at At5g38760 hypothetical protein LOC100256501 - 2e-67 At1g16720 HCF173 (high chlorophyll fluorescence phenotype 173) O.I. H.G. S.X.
0.50 72.7 1622503_at At5g38760 - - 9e-8 At4g37990 ELI3-2 (ELICITOR-ACTIVATED GENE 3-2) O.I. H.G. S.X.
0.50 72.7 1608097_at At5g38760 - - 4e-4 At5g40390 SIP1 (seed imbibition 1-like) O.I. H.G. S.X.
0.50 72.7 1618419_at At5g38760 hypothetical protein LOC100252541 - 3e-1 At5g23060 CaS (Calcium sensing receptor) O.I. H.G. S.X.
0.46 66.5 1622209_at At5g38760 hypothetical protein LOC100254328 - 6e-39 At2g26580 YAB5 (YABBY5) O.I. H.G. S.X.
0.45 64.6 1607624_at At5g38760 hypothetical protein LOC100255131 - 6e-15 At5g12470 unknown protein O.I. H.G. S.X.
0.44 64.1 1613445_at At5g38760 hypothetical protein LOC100243659 - 2e-2 At1g53230 TCP3 O.I. H.G. S.X.
0.43 61.5 1622297_at At5g38760 hypothetical protein LOC100241597 - 4e+0 At1g65360 AGL23 (AGAMOUS-LIKE 23) O.I. H.G. S.X.
0.40 57.7 1620639_at At5g38760 hypothetical protein LOC100247658 - 3e-1 At1g10455 unknown protein O.I. H.G. S.X.
0.39 54.9 1621987_at At5g38760 hypothetical protein LOC100262309 - 9e-15 At1g11670 MATE efflux family protein O.I. H.G. S.X.
0.38 53.6 1610325_at At5g38760 hypothetical LOC100241660 - 5e+0 At5g17795 unknown protein O.I. H.G. S.X.
0.37 51.7 1619526_at At5g38760 hypothetical protein LOC100247097 - 1e-48 At3g11170 FAD7 (FATTY ACID DESATURASE 7) O.I. H.G. S.X.
0.36 50.7 1615434_at At5g38760 hypothetical protein LOC100257403 - 1e+0 At5g04620 ATBIOF (BIOTIN F) O.I. H.G. S.X.
0.35 48.5 1613826_at At5g38760 hypothetical protein LOC100241562 - 4e-30 At1g55480 binding / protein binding O.I. H.G. S.X.
0.34 46.8 1616349_a_at At5g38760 GDP-mannose-3',5'-epimerase - 0 At5g28840 GME (GDP-D-MANNOSE 3',5'-EPIMERASE) O.I. H.G. S.X.
0.33 45.7 1619741_at At5g38760 hypothetical protein LOC100259693 - 4e-50 At4g14550 IAA14 (INDOLE-3-ACETIC ACID INDUCIBLE 14) O.I. H.G. S.X.
0.32 43.1 1619119_at At5g38760 hypothetical protein LOC100252541 - 9e-2 At5g23060 CaS (Calcium sensing receptor) O.I. H.G. S.X.
0.28 37.7 1620398_at At5g38760 hypothetical LOC100263767 - 1e-3 At3g09690 hydrolase, alpha/beta fold family protein O.I. H.G. S.X.
0.26 32.0 1608631_s_at At5g38760 hypothetical protein LOC100251454 - 5e+0 Atmg01100 - O.I. H.G. S.X.
0.23 27.5 1609508_at At5g38760 hypothetical protein LOC100242787 - 4e-3 At5g45960 GDSL-motif lipase/hydrolase family protein O.I. H.G. S.X.

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.89	95.5	1613045_at	At5g38760	hypothetical protein LOC100243125	-	7e-2	At5g52160	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	O.I.	H.G.	S.X.
0.67	87.9	1620650_s_at	At5g38760	hypothetical protein LOC100255907	-	7e-5	At4g37990	ELI3-2 (ELICITOR-ACTIVATED GENE 3-2)	O.I.	H.G.	S.X.
0.65	85.0	1619157_at	At5g38760	inward rectifying shaker-like K+ channel	-	3e-66	At4g18290	KAT2 (POTASSIUM CHANNEL IN ARABIDOPSIS THALIANA 2)	O.I.	H.G.	S.X.
0.60	81.9	1616686_at	At5g38760	-	-	1e+0	At1g44000	unknown protein	O.I.	H.G.	S.X.
0.54	75.7	1618021_at	At5g38760	-	-	4e+0	At5g08055	-	O.I.	H.G.	S.X.
0.52	73.9	1622682_at	At5g38760	hypothetical protein LOC100256501	-	2e-67	At1g16720	HCF173 (high chlorophyll fluorescence phenotype 173)	O.I.	H.G.	S.X.
0.50	72.7	1622503_at	At5g38760	-	-	9e-8	At4g37990	ELI3-2 (ELICITOR-ACTIVATED GENE 3-2)	O.I.	H.G.	S.X.
0.50	72.7	1608097_at	At5g38760	-	-	4e-4	At5g40390	SIP1 (seed imbibition 1-like)	O.I.	H.G.	S.X.
0.50	72.7	1618419_at	At5g38760	hypothetical protein LOC100252541	-	3e-1	At5g23060	CaS (Calcium sensing receptor)	O.I.	H.G.	S.X.
0.46	66.5	1622209_at	At5g38760	hypothetical protein LOC100254328	-	6e-39	At2g26580	YAB5 (YABBY5)	O.I.	H.G.	S.X.
0.45	64.6	1607624_at	At5g38760	hypothetical protein LOC100255131	-	6e-15	At5g12470	unknown protein	O.I.	H.G.	S.X.
0.44	64.1	1613445_at	At5g38760	hypothetical protein LOC100243659	-	2e-2	At1g53230	TCP3	O.I.	H.G.	S.X.
0.43	61.5	1622297_at	At5g38760	hypothetical protein LOC100241597	-	4e+0	At1g65360	AGL23 (AGAMOUS-LIKE 23)	O.I.	H.G.	S.X.
0.40	57.7	1620639_at	At5g38760	hypothetical protein LOC100247658	-	3e-1	At1g10455	unknown protein	O.I.	H.G.	S.X.
0.39	54.9	1621987_at	At5g38760	hypothetical protein LOC100262309	-	9e-15	At1g11670	MATE efflux family protein	O.I.	H.G.	S.X.
0.38	53.6	1610325_at	At5g38760	hypothetical LOC100241660	-	5e+0	At5g17795	unknown protein	O.I.	H.G.	S.X.
0.37	51.7	1619526_at	At5g38760	hypothetical protein LOC100247097	-	1e-48	At3g11170	FAD7 (FATTY ACID DESATURASE 7)	O.I.	H.G.	S.X.
0.36	50.7	1615434_at	At5g38760	hypothetical protein LOC100257403	-	1e+0	At5g04620	ATBIOF (BIOTIN F)	O.I.	H.G.	S.X.
0.35	48.5	1613826_at	At5g38760	hypothetical protein LOC100241562	-	4e-30	At1g55480	binding / protein binding	O.I.	H.G.	S.X.
0.34	46.8	1616349_a_at	At5g38760	GDP-mannose-3',5'-epimerase	-	0	At5g28840	GME (GDP-D-MANNOSE 3',5'-EPIMERASE)	O.I.	H.G.	S.X.
0.33	45.7	1619741_at	At5g38760	hypothetical protein LOC100259693	-	4e-50	At4g14550	IAA14 (INDOLE-3-ACETIC ACID INDUCIBLE 14)	O.I.	H.G.	S.X.
0.32	43.1	1619119_at	At5g38760	hypothetical protein LOC100252541	-	9e-2	At5g23060	CaS (Calcium sensing receptor)	O.I.	H.G.	S.X.
0.28	37.7	1620398_at	At5g38760	hypothetical LOC100263767	-	1e-3	At3g09690	hydrolase, alpha/beta fold family protein	O.I.	H.G.	S.X.
0.26	32.0	1608631_s_at	At5g38760	hypothetical protein LOC100251454	-	5e+0	Atmg01100	-	O.I.	H.G.	S.X.
0.23	27.5	1609508_at	At5g38760	hypothetical protein LOC100242787	-	4e-3	At5g45960	GDSL-motif lipase/hydrolase family protein	O.I.	H.G.	S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Zea_mays

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Gene ID	Os11g0258900
Gene name
Homology with Arabidopsis	Similar to At5g38760: unknown protein (HF=9e-1)
Module size	6 genes
NF	0.46
%ile	58.3

Co-expression analysis

Gene ID Os11g0258900 Gene name Homology with ArabidopsisSimilar to At5g38760: unknown protein (HF=9e-1) Module size 6 genes NF 0.46 %ile 58.3

Co-expressed genes

Click More genes

Specific experiments for the module

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgarePopulus_trichocarpaTriticum_aestivumZea_mays

Gene ID Os11g0258900

Gene name
Homology with Arabidopsis Similar to At5g38760: unknown protein (HF=9e-1)

Module size 6 genes

NF 0.46

%ile 58.3

SF Genes GO ID Process Name Link to AmiGO

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Zea_mays