CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os11g0258900

Gene name
Homology with Arabidopsis Similar to At5g38760: unknown protein (HF=9e-1)

Module size 6 genes

NF 0.46

%ile 58.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.9 0.94 Os11g0258900 AK102638.1 - Conserved hypothetical protein 9e-1 At5g38760 unknown protein O.I. H.G. S.X.
0.50 68.0 0.95 Os01g0210100 NM_197507.1 - - 2e+0 At5g38760 unknown protein O.I. H.G. S.X.
0.50 68.0 0.96 Os01g0840900 AK063699.1 - Hypothetical protein 2e-1 At1g71090 auxin efflux carrier family protein O.I. H.G. S.X.
0.36 44.0 0.95 Os08g0158800 AK107200.1 - Hypothetical protein 2e-1 At1g44191 - O.I. H.G. S.X.
0.29 31.1 0.94 Os11g0307600 AK070683.1 - Conserved hypothetical protein 2e-2 At2g44390 DC1 domain-containing protein O.I. H.G. S.X.
0.20 16.5 0.94 Os03g0158700 AK071242.1 - - 9e+0 At4g24060 Dof-type zinc finger domain-containing protein O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.91	98.9	0.94	Os11g0258900	AK102638.1	-	Conserved hypothetical protein	9e-1	At5g38760	unknown protein	O.I.	H.G.	S.X.
0.50	68.0	0.95	Os01g0210100	NM_197507.1	-	-	2e+0	At5g38760	unknown protein	O.I.	H.G.	S.X.
0.50	68.0	0.96	Os01g0840900	AK063699.1	-	Hypothetical protein	2e-1	At1g71090	auxin efflux carrier family protein	O.I.	H.G.	S.X.
0.36	44.0	0.95	Os08g0158800	AK107200.1	-	Hypothetical protein	2e-1	At1g44191	-	O.I.	H.G.	S.X.
0.29	31.1	0.94	Os11g0307600	AK070683.1	-	Conserved hypothetical protein	2e-2	At2g44390	DC1 domain-containing protein	O.I.	H.G.	S.X.
0.20	16.5	0.94	Os03g0158700	AK071242.1	-	-	9e+0	At4g24060	Dof-type zinc finger domain-containing protein	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
27.6 99.6 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
11.1 98.2 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.2 98.0 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.7 97.8 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.3 97.7 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
8.0 97.6 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.9 97.6 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.8 97.6 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.9 97.3 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.7 97.3 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
27.6	99.6	GSM422676	Control	GSE16865	Heterologous microarrays for the study of drought stress in Musa
11.1	98.2	GSM377075	Genomic DNA - 45 day old leaf sample - mutant g650	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.2	98.0	GSM377084	Genomic DNA - 45 day old leaf sample - mutant f1856	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.7	97.8	GSM377070	Genomic DNA - 45 day old leaf sample - mutant d1	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.3	97.7	GSM422672	Drought	GSE16865	Heterologous microarrays for the study of drought stress in Musa
8.0	97.6	GSM377073	Genomic DNA - 45 day old leaf sample - mutant d2943	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.9	97.6	GSM377081	Genomic DNA - 45 day old leaf sample - mutant g7534	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.8	97.6	GSM377076	Genomic DNA - 45 day old leaf sample - mutant g6485	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.9	97.3	GSM377071	Genomic DNA - 45 day old leaf sample - mutant d256	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.7	97.3	GSM377072	Genomic DNA - 45 day old leaf sample - mutant d1137	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.221733.1.S1_s_at, orthologous to the query gene, Os11g0258900

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.92 99.3 PtpAffx.221733.1.S1_s_at At5g38760 hypothetical protein - 8e-5 At1g32730 unknown protein O.I. H.G. S.X.
0.38 63.7 PtpAffx.221607.1.S1_at At5g38760 hypothetical protein - 4e-2 At5g37930 seven in absentia (SINA) family protein O.I. H.G. S.X.
0.31 53.7 PtpAffx.249.450.S1_at At5g38760 hypothetical protein - 1e+0 At1g52590 - O.I. H.G. S.X.
0.29 50.5 PtpAffx.210578.1.S1_at At5g38760 hypothetical protein - 1e-27 At5g66540 - O.I. H.G. S.X.
0.29 50.5 PtpAffx.215338.1.S1_s_at At5g38760 hypothetical protein - 8e-15 At2g45320 unknown protein O.I. H.G. S.X.
0.28 50.5 PtpAffx.113553.1.S1_a_at At5g38760 hypothetical protein - 6e-31 At5g65620 peptidase M3 family protein / thimet oligopeptidase family protein O.I. H.G. S.X.
0.27 47.1 PtpAffx.78969.1.S1_at At5g38760 hypothetical protein - 1e-6 At1g02145 transferase, transferring glycosyl groups O.I. H.G. S.X.
0.26 45.2 PtpAffx.104237.1.A1_at At5g38760 - - 4e-8 At1g72990 BGAL17 (beta-galactosidase 17) O.I. H.G. S.X.
0.25 43.6 PtpAffx.203143.1.S1_at At5g38760 hypothetical protein - 1e-56 At1g17760 CSTF77 O.I. H.G. S.X.
0.25 43.6 PtpAffx.207427.1.S1_at At5g38760 hypothetical protein - 5e-29 At5g65685 soluble glycogen synthase-related O.I. H.G. S.X.
0.24 41.8 PtpAffx.217285.1.S1_at At5g38760 hypothetical protein - 5e-2 At3g56420 - O.I. H.G. S.X.
0.24 41.8 PtpAffx.114924.1.A1_s_at At5g38760 hypothetical protein - 5e-6 At4g09020 ISA3 (ISOAMYLASE 3) O.I. H.G. S.X.
0.23 40.5 PtpAffx.200279.1.S1_s_at At5g38760 hypothetical protein - 2e-50 At5g47860 unknown protein O.I. H.G. S.X.
0.21 36.5 PtpAffx.82174.1.A1_at At5g38760 hypothetical protein - 6e-15 At5g15920 structural maintenance of chromosomes (SMC) family protein (MSS2) O.I. H.G. S.X.
0.20 34.6 PtpAffx.203291.1.S1_at At5g38760 hypothetical protein - 1e-13 At4g11110 SPA2 (SPA1-RELATED 2) O.I. H.G. S.X.
0.19 32.7 PtpAffx.158988.1.S1_at At5g38760 hypothetical protein - 7e-9 At1g79600 ABC1 family protein O.I. H.G. S.X.
0.18 30.8 PtpAffx.215584.1.S1_at At5g38760 hypothetical protein - 4e-1 At1g33330 peptide chain release factor, putative O.I. H.G. S.X.
0.18 30.8 PtpAffx.206245.1.S1_at At5g38760 hypothetical protein - 4e-93 At5g02250 EMB2730 (EMBRYO DEFECTIVE 2730) O.I. H.G. S.X.
0.17 29.1 PtpAffx.134798.1.S1_at At5g38760 hypothetical protein - 4e-1 At5g08380 AtAGAL1 (Arabidopsis thaliana ALPHA-GALACTOSIDASE 1) O.I. H.G. S.X.
0.17 29.1 Ptp.4229.1.S1_s_at At5g38760 hypothetical protein - 5e-6 At5g01590 unknown protein O.I. H.G. S.X.
0.17 29.1 PtpAffx.249.240.S1_at At5g38760 hypothetical protein - 9e-35 At3g45240 GRIK1 (GEMINIVIRUS REP INTERACTING KINASE 1) O.I. H.G. S.X.
0.16 26.9 PtpAffx.103881.1.A1_at At5g38760 hypothetical protein - 3e-5 At3g55390 integral membrane family protein O.I. H.G. S.X.
0.16 26.9 PtpAffx.25622.1.S1_at At5g38760 hypothetical protein - 3e-43 At5g47760 ATPGLP2 (ARABIDOPSIS THALIANA 2-PHOSPHOGLYCOLATE PHOSPHATASE 2) O.I. H.G. S.X.
0.14 23.5 PtpAffx.89237.1.A1_at At5g38760 hypothetical protein - 3e-11 At1g21710 OGG1 (8-OXOGUANINE-DNA GLYCOSYLASE 1) O.I. H.G. S.X.
0.14 23.5 PtpAffx.201679.1.S1_at At5g38760 hypothetical protein - 4e-17 At1g06730 pfkB-type carbohydrate kinase family protein O.I. H.G. S.X.
0.13 21.6 PtpAffx.205793.1.S1_at At5g38760 - - 2e-9 At1g45110 tetrapyrrole methylase family protein O.I. H.G. S.X.
0.11 18.1 PtpAffx.205718.1.S1_at At5g38760 hypothetical protein - 1e+0 At5g48540 33 kDa secretory protein-related O.I. H.G. S.X.
0.07 11.6 PtpAffx.158462.1.S1_at At5g38760 predicted membrane protein - 5e-6 At4g13590 unknown protein O.I. H.G. S.X.
0.07 11.6 PtpAffx.83913.1.S1_at At5g38760 hypothetical protein - 1e+0 At1g67360 rubber elongation factor (REF) family protein O.I. H.G. S.X.
0.06 9.8 PtpAffx.217815.1.S1_s_at At5g38760 hypothetical protein - 2e+0 At2g37190 60S ribosomal protein L12 (RPL12A) O.I. H.G. S.X.

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.92	99.3	PtpAffx.221733.1.S1_s_at	At5g38760	hypothetical protein	-	8e-5	At1g32730	unknown protein	O.I.	H.G.	S.X.
0.38	63.7	PtpAffx.221607.1.S1_at	At5g38760	hypothetical protein	-	4e-2	At5g37930	seven in absentia (SINA) family protein	O.I.	H.G.	S.X.
0.31	53.7	PtpAffx.249.450.S1_at	At5g38760	hypothetical protein	-	1e+0	At1g52590	-	O.I.	H.G.	S.X.
0.29	50.5	PtpAffx.210578.1.S1_at	At5g38760	hypothetical protein	-	1e-27	At5g66540	-	O.I.	H.G.	S.X.
0.29	50.5	PtpAffx.215338.1.S1_s_at	At5g38760	hypothetical protein	-	8e-15	At2g45320	unknown protein	O.I.	H.G.	S.X.
0.28	50.5	PtpAffx.113553.1.S1_a_at	At5g38760	hypothetical protein	-	6e-31	At5g65620	peptidase M3 family protein / thimet oligopeptidase family protein	O.I.	H.G.	S.X.
0.27	47.1	PtpAffx.78969.1.S1_at	At5g38760	hypothetical protein	-	1e-6	At1g02145	transferase, transferring glycosyl groups	O.I.	H.G.	S.X.
0.26	45.2	PtpAffx.104237.1.A1_at	At5g38760	-	-	4e-8	At1g72990	BGAL17 (beta-galactosidase 17)	O.I.	H.G.	S.X.
0.25	43.6	PtpAffx.203143.1.S1_at	At5g38760	hypothetical protein	-	1e-56	At1g17760	CSTF77	O.I.	H.G.	S.X.
0.25	43.6	PtpAffx.207427.1.S1_at	At5g38760	hypothetical protein	-	5e-29	At5g65685	soluble glycogen synthase-related	O.I.	H.G.	S.X.
0.24	41.8	PtpAffx.217285.1.S1_at	At5g38760	hypothetical protein	-	5e-2	At3g56420	-	O.I.	H.G.	S.X.
0.24	41.8	PtpAffx.114924.1.A1_s_at	At5g38760	hypothetical protein	-	5e-6	At4g09020	ISA3 (ISOAMYLASE 3)	O.I.	H.G.	S.X.
0.23	40.5	PtpAffx.200279.1.S1_s_at	At5g38760	hypothetical protein	-	2e-50	At5g47860	unknown protein	O.I.	H.G.	S.X.
0.21	36.5	PtpAffx.82174.1.A1_at	At5g38760	hypothetical protein	-	6e-15	At5g15920	structural maintenance of chromosomes (SMC) family protein (MSS2)	O.I.	H.G.	S.X.
0.20	34.6	PtpAffx.203291.1.S1_at	At5g38760	hypothetical protein	-	1e-13	At4g11110	SPA2 (SPA1-RELATED 2)	O.I.	H.G.	S.X.
0.19	32.7	PtpAffx.158988.1.S1_at	At5g38760	hypothetical protein	-	7e-9	At1g79600	ABC1 family protein	O.I.	H.G.	S.X.
0.18	30.8	PtpAffx.215584.1.S1_at	At5g38760	hypothetical protein	-	4e-1	At1g33330	peptide chain release factor, putative	O.I.	H.G.	S.X.
0.18	30.8	PtpAffx.206245.1.S1_at	At5g38760	hypothetical protein	-	4e-93	At5g02250	EMB2730 (EMBRYO DEFECTIVE 2730)	O.I.	H.G.	S.X.
0.17	29.1	PtpAffx.134798.1.S1_at	At5g38760	hypothetical protein	-	4e-1	At5g08380	AtAGAL1 (Arabidopsis thaliana ALPHA-GALACTOSIDASE 1)	O.I.	H.G.	S.X.
0.17	29.1	Ptp.4229.1.S1_s_at	At5g38760	hypothetical protein	-	5e-6	At5g01590	unknown protein	O.I.	H.G.	S.X.
0.17	29.1	PtpAffx.249.240.S1_at	At5g38760	hypothetical protein	-	9e-35	At3g45240	GRIK1 (GEMINIVIRUS REP INTERACTING KINASE 1)	O.I.	H.G.	S.X.
0.16	26.9	PtpAffx.103881.1.A1_at	At5g38760	hypothetical protein	-	3e-5	At3g55390	integral membrane family protein	O.I.	H.G.	S.X.
0.16	26.9	PtpAffx.25622.1.S1_at	At5g38760	hypothetical protein	-	3e-43	At5g47760	ATPGLP2 (ARABIDOPSIS THALIANA 2-PHOSPHOGLYCOLATE PHOSPHATASE 2)	O.I.	H.G.	S.X.
0.14	23.5	PtpAffx.89237.1.A1_at	At5g38760	hypothetical protein	-	3e-11	At1g21710	OGG1 (8-OXOGUANINE-DNA GLYCOSYLASE 1)	O.I.	H.G.	S.X.
0.14	23.5	PtpAffx.201679.1.S1_at	At5g38760	hypothetical protein	-	4e-17	At1g06730	pfkB-type carbohydrate kinase family protein	O.I.	H.G.	S.X.
0.13	21.6	PtpAffx.205793.1.S1_at	At5g38760	-	-	2e-9	At1g45110	tetrapyrrole methylase family protein	O.I.	H.G.	S.X.
0.11	18.1	PtpAffx.205718.1.S1_at	At5g38760	hypothetical protein	-	1e+0	At5g48540	33 kDa secretory protein-related	O.I.	H.G.	S.X.
0.07	11.6	PtpAffx.158462.1.S1_at	At5g38760	predicted membrane protein	-	5e-6	At4g13590	unknown protein	O.I.	H.G.	S.X.
0.07	11.6	PtpAffx.83913.1.S1_at	At5g38760	hypothetical protein	-	1e+0	At1g67360	rubber elongation factor (REF) family protein	O.I.	H.G.	S.X.
0.06	9.8	PtpAffx.217815.1.S1_s_at	At5g38760	hypothetical protein	-	2e+0	At2g37190	60S ribosomal protein L12 (RPL12A)	O.I.	H.G.	S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

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Gene ID	Os11g0258900
Gene name
Homology with Arabidopsis	Similar to At5g38760: unknown protein (HF=9e-1)
Module size	6 genes
NF	0.46
%ile	58.3

Co-expression analysis

Gene ID Os11g0258900 Gene name Homology with ArabidopsisSimilar to At5g38760: unknown protein (HF=9e-1) Module size 6 genes NF 0.46 %ile 58.3

Co-expressed genes

Click More genes

Specific experiments for the module

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgareTriticum_aestivumVitis_viniferaZea_mays

Gene ID Os11g0258900

Gene name
Homology with Arabidopsis Similar to At5g38760: unknown protein (HF=9e-1)

Module size 6 genes

NF 0.46

%ile 58.3

SF Genes GO ID Process Name Link to AmiGO

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Triticum_aestivum
Vitis_vinifera
Zea_mays